Scleropages formosus (Asian bonytongue): 108933628
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Entry
108933628 CDS
T04919
Symbol
taf5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108933628 (taf5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108933628 (taf5)
03036 Chromosome and associated proteins [BR:
sfm03036
]
108933628 (taf5)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108933628 (taf5)
Coactivators
SAGA/TFTC/STAGA complex
108933628 (taf5)
Chromosome and associated proteins [BR:
sfm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
108933628 (taf5)
STAGA complex
108933628 (taf5)
TFTC complex
108933628 (taf5)
SAGA complex
108933628 (taf5)
SLIK complex
108933628 (taf5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
WD40_like
VPS8_N
eIF2A
RAB3GAP2_N
CDK5RAP3
PROPPIN
Motif
Other DBs
NCBI-GeneID:
108933628
NCBI-ProteinID:
XP_018606322
LinkDB
All DBs
Position
16:22365601..22370599
Genome browser
AA seq
746 aa
AA seq
DB search
MAAVQDAPVEADNEKEIKTETLNDAAGNHASAAGGVIPSPPVASTSSSGPAKAGGPGSEE
QQTLMAVLQFLKKNNFVGAVDVLRREAGILEDSDESQGQELAASALGGAEAGDATCTLSR
ASSCTTSTPAVAAAPAKGGEDQPDVNVVLSAYSQQGDPALYQGYYSGLKKFVESVLDCHR
AELSQLFYPLFVHMYLELVYNNHETEAKAFFEKFSGDQECYYQDDLRVLSGLTKKEHMKG
NETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQID
SMSGSLAGEAKREANKAKVFYGLLKEPEIDVPLDDEDEEGENEEGKPKKKKPKKDSMGSK
SKKQDPNAPQQNRIPLPELKDSDKLDKIMYMKEATKRIRLGPESLPSICFYTFLNAYQGL
TAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRSVKSAADLNLIDKESDDVLERIMDEKSA
SESKILYGHSGPVYGVSFSPDRNYLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF
SPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTQFHPNSNYVATGSADRTVRL
WDILNGNCVRIFTGHKGPIHSLAFSPNGKYLASGATDGRVLLWDIGHGLMIGELKGHTDT
VYSLKFSRDGEILASGSMDNTVRLWDSIKAFDDIETDDFTAATGHIHLPENSQELLLGTY
MTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggttcaggatgctcccgtggaagcggacaatgagaaggaaattaagactgaa
acgttgaacgatgcagcggggaaccatgcctcggccgccgggggtgtcattccttctcct
ccggtggcctccacgtcgtcgagcgggcccgccaaagccggcggccccggctcggaggag
cagcagaccctgatggccgtcctgcagttcctcaagaagaacaacttcgtgggcgccgtg
gacgtgctgcgccgggaggccggtatactggaggactcggacgagtcccagggacaggag
ctggccgcgtcggcgctcggcggggccgaggctggagatgcgacttgcaccctgagccgg
gcttccagctgcacgactagcaccccggcggtggccgcggcgcccgccaaaggtggggag
gaccagccggacgtgaatgtcgttctgtccgcatacagccagcagggagacccagctttg
taccagggttattacagtggactgaaaaagtttgtcgagtcggttctggactgtcacaga
gctgagctttcgcagcttttctacccactctttgtgcatatgtacttggaactggtctac
aacaaccacgaaactgaagcaaaagcatttttcgaaaagtttagcggagatcaggagtgt
tactaccaggacgaccttcgggtgctctctgggctaactaagaaagagcatatgaagggg
aatgaaactttactggatttccgcaccagcaagtttgtcctacgtatctccagggactcc
taccagctgctgaagaggcatctgcaggaacgacagaacaaccagatctggaacatcatc
caggagcatctgtacatagatatttttgatggcatgccacgcagcaagagtcagattgac
agtatgtctggcagtctggccggggaagccaagcgggaggccaataaagccaaggtgttc
tacgggcttttgaaagaaccagagatcgacgttcctcttgatgatgaggatgaagagggt
gaaaatgaggaggggaaaccaaaaaagaagaaacctaaaaaagacagtatgggatcaaag
agcaagaaacaagaccccaatgcaccccagcaaaacagaatacctcttccggaactgaag
gactcagacaagctggataaaatcatgtatatgaaagaggccaccaaaaggattcgtctg
ggtcctgagagcttgccttccatctgtttttatacatttctcaatgcatatcagggtctg
actgctgtagacttcacagatgattccagcctcattgcaggtggctttgcagattcaact
gtgcgtgtgtggagcgtcactcccaagaaactacggagcgtcaaatcagctgcagatttg
aacctgattgataaagaatctgatgatgtactagaaaggataatggatgagaagtcagcc
agtgagtctaagatcctatatggacacagtggccctgtgtacggtgtgagtttcagtcct
gacagaaattaccttttatcctgctctgaagatggtactgtgagattgtggagccttcag
acttttacgtgtctggtggggtacaagggacacaactatcctgtttgggacacccagttc
tccccatacggctactacttcatatctggtggacatgacagagttgctcggctttgggca
acagatcattaccagccattacggatgtttgcggggcaccttgctgacatcacatgcacc
cagttccatcccaactccaactatgtggccactgggtctgcagatcgcaccgttaggctc
tgggacattctgaatggaaactgtgtccgcattttcacaggacacaaggggccaatacat
tccctagccttttctcctaacgggaagtatctagcatcaggagccacggatggaagagtt
cttctttgggacattggtcatggcttgatgattggggagctcaaaggccacacagacact
gtctattccctcaagtttagccgggatggagaaattctggcctcaggctccatggataat
acagtgagactgtgggactctatcaaggcatttgatgacatagagacagatgattttact
gcagccacaggtcacattcatctgcctgaaaattcccaggagctactgttgggaacatat
atgactaaatccacacctgtcattcatctgcacttcacacgaagaaatctacttctggct
gcaggggcttacaatccatag
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