Scleropages formosus (Asian bonytongue): 108933718
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Entry
108933718 CDS
T04919
Symbol
pdcd11
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfm03009
]
108933718 (pdcd11)
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
90S particles
Other 90S particles
108933718 (pdcd11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
Spt6_S1
Suf
TPR_14
OB_RRP5_4th
HAT_Syf1_CNRKL1_C
TPR_19
OB_RRP5
UTP6_C
TPR_15
NRDE-2
ARM_TT21
ARM_TT21_5th
ANAPC3
Cu-oxidase
Pal1
Motif
Other DBs
NCBI-GeneID:
108933718
NCBI-ProteinID:
XP_018606463
UniProt:
A0A8C9UZB9
LinkDB
All DBs
Position
16:22372364..22394450
Genome browser
AA seq
1796 aa
AA seq
DB search
MASPEEDFPRGGISKKISGSKPVVQHVEADNLFQTCETAENKKKRKSIKQGDGKDAKKQK
IAKEESLKLNAAKTVDILHLKNIKVGTLILGCVKEVTDFEVVISLPSGITGFLPVTNLSE
AYRKMLCSQLDLDDDTEEIFTLPYLFPLGMLVRCVVSSLGTTKTGHISLKLSIDPKLVNS
GLNAGTLKAGMVLSGCVESIEDHGFLVDIGLSGTRAFLAKPEANQCSAKQAELKVGQYVT
CLLEEVKNNGRIVRVSMNPATVAQTFATAEHGWTLSSLLPGLLVNAEIKKVTKNGLVLEF
LSSFTGTVDFLNMDPERAESYSPGDKLKACVLYVEPSTRSVGLSLLTHLFKPGCVVEPVF
SERVGEVVEGCRLKCLHSASGAILELPEKTVAFVHRNYLQEANESFSHNKIISTLSHVCR
IMDFSPLEQMHTASLRRSIIDTPFLRYQDIRPGQLLEGTVLSVQPSGVIVKVTDHIRGLV
PSLHVADVVLKNPEKKYSVGKKVKCRVLLVEPPSRKLLLTRKKALLDSTLPLIRSYAEAR
VGKVSHGYVVCVKDFGCIVRFYGNVKGLVPLQELTAEPVVDPQQLFYVGQVVKTKVLSCN
AEQEKLLLSFKAAMGPESDSMKEHLQEFNFEIGTKVEARIVKKLPDVLQMSILPEESPAL
LPRAHLSDHVSNCSLLWEALREGDVVSNAVCLSKSKSNAILTKKPIVAAALEDGFVARDF
SDLQVGMQLVGWVKNIMPYGVFVEFPYGLVALAPKSAISDMFVTSTEGIFQIGQTLLTKV
TNLDEEKRRVLVSLKVSDVSSGEEDSLGRLLHGLQERTAMVKMMSSRADLKLPEFLCSLT
LGQKLKVTVGTVKEDGSVTFVGDELPGVTVVAKKYHVTGVKVAPGEKVTVVVLHVDLLAL
QVHVSLIPELVGKKKHLETGSTLPAAVRYLEEEFAVISLADKGHLTVVHTTAHLNESFRF
KSQKLAVGSSLSVIVKDSSCEELGGLPLVLRAALAEGAQGPTLDGSAKPYRIGNVVTGTV
KAIRPLSILVSLPDNVKGSIHVSQIKDVVSPGSYPTSTVKKGSTVTAKVIGTKDVAAHNY
LPISHPAFKFTVPELTMLPSVMEGNASLQGAKMMRKLKRYRPGDEITCYVSKYNMQKKYL
EVEVSPFISGVVDLLLMTLDHKKLKHPEKMYRTGQALSAKVAGHSHVPKQLSLSLTGVYS
LSTGAVTLGIVRKVVAHSGLAVSLPFGRSGFVSLLDLADSYRPNPLETYLVGTIVRCCVI
GEDDGSLQLSLRPSRVKASSAPPVRDVEVLSIDDLKEGQIVRGYVKSVGDSGVFIRLSRS
ITGLARYQQLTTYFVKDHSVYAKHIQLSGLYTTKVVSVNKEKGHVELSLLPQDTGKPDVL
PESLGLPLRLGRKENKGKRKRAQCESKQVPGKNVKKTDVKSDENDSGVEVFFREEEKQDK
SRKACRAVEGVEAQPVRLHVPGGFSWDASLSSLRPTTAAKDEDSSDEEEAPGQPRKKSKK
DRELEKQQEEKRLSQLENELMDPNLQPRSANAFERLVLSSPDSSLVWLQYMAFHLQATEI
EQARAVAERALKTISFREEQEKLNVWVALLNLENLYGSEDSLHKVFERALQYCEPLPVYQ
QLADIYTTSNKHKEAEMLYKNMVKRFSQDRAVWLSYATFLLKQGQNDSVHALLQRALKSL
PNKEHVDLIAKFAQLEFKYGDVERGKSMFDRTLSNYPKRTDLWSIYIDLMIKHGTQKEVR
ELFDRVIHLSVAVKRIKFFFKRYLEYEKKNGTPESVQAVKEKALQYVEAKGSAAAS
NT seq
5391 nt
NT seq
+upstream
nt +downstream
nt
atggcatctcctgaagaggacttcccacgtggaggcatatccaagaagatcagtgggagc
aaacctgtggtccaacacgttgaagcagacaacttgttccagacctgtgagacagcagaa
aataagaagaaaaggaaaagcataaaacaaggagatgggaaggatgcaaagaagcagaaa
attgctaaagaagaatcgctgaaactcaacgcagctaaaactgttgacattctccatctg
aagaacatcaaggttggaacattgatcctgggctgtgtaaaggaggtcactgatttcgag
gtggtcatcagccttcctagtggaatcacaggcttcctcccagtaaccaacctctctgag
gcatacagaaagatgctctgcagccagctggacttggatgatgacacagaggaaatattc
actctgccctacctctttccactgggaatgctggtgcgttgtgttgtgtccagtttggga
accacaaaaactggtcacataagcctcaagctctccattgatcctaagcttgtcaacagt
ggtctcaatgcaggaaccctgaaagctggaatggtgctcagcggctgtgtggagagtatt
gaggaccacggctttctggttgacattggtctgagcgggaccagagctttccttgcaaaa
ccagaagccaaccagtgttctgcaaaacaggccgaactcaaggtcggtcagtacgtcacc
tgtctgctggaggaggttaaaaacaacgggcgcatcgtccgtgtctcgatgaaccccgca
acagtcgcccagacttttgctacggctgagcacggctggaccctgagcagccttttgccg
ggtcttttggtcaacgcagagatcaagaaggtgaccaaaaatggcttggtgctcgaattt
ctctcctccttcactggcactgtagactttctcaacatggatcctgagagagcagaaagc
tacagccctggagataaattgaaagcgtgtgtgctgtacgtggagcccagcacgcggtcg
gtgggtttgtcactgctcacgcacctcttcaagccagggtgcgtggtggagccggtgttc
agcgagcgggtaggcgaggtcgtggagggctgcaggctcaagtgcttgcatagcgcatcc
ggggccattctggagctgccggaaaagacggtggccttcgttcatagaaattacctgcag
gaggccaatgaatctttcagccataacaagatcataagcacactgtcccatgtgtgcagg
atcatggacttcagtccactggagcagatgcacacagccagtttgcgcaggagtattatt
gatacaccctttctcagatatcaagacataagacctgggcagttgttagagggtacggta
ttatctgtgcagccctctggagtgatcgtcaaggtgactgatcacattaggggactggtc
cccagtcttcatgtcgctgatgtagtcctgaagaacccggagaaaaagtacagtgtgggg
aaaaaagtcaagtgtcgggtgctgttagtggagcctccctctaggaagctcctgctgacg
aggaagaaggccctactggactccaccctccccctcatccgcagctacgcagaagccagg
gttgggaaggtttcccacggctacgtcgtctgtgtgaaggactttggctgcatcgtgcgc
ttctacggcaacgtgaagggtctggtcccactgcaggagctcaccgcagagccagtggtc
gatccgcagcagcttttctatgttggacaggttgtgaagactaaggtcttgtcatgtaac
gctgaacaggagaagctgctcctgtccttcaaggctgcgatgggcccagagagtgacagc
atgaaagagcaccttcaggagtttaacttcgaaattggaacgaaagtagaagccaggatt
gtgaagaaacttccggatgtcctgcagatgtcgatcctgcctgaagaatctccagctctc
cttccgagagcccatctgtctgaccacgtctccaactgctctttgctttgggaagcatta
agagagggagatgtggtctccaatgcagtttgtctcagcaagagcaagagcaacgctata
ctaactaagaagccaattgtggcagctgccctagaggatggctttgtagccagggacttc
tctgacctccaggtgggaatgcagctcgtgggctgggtcaagaacatcatgccatacggg
gtctttgtggagttcccatatggtctcgtagcactggcgcccaaatcggctattagtgac
atgtttgtcaccagcactgagggcatcttccagataggccagactttgttgactaaagtg
accaacctggatgaggagaagcgcagggtgctggtgtccctgaaggtgtcggacgtctcc
tctggagaggaggattccctaggcaggctgttacatggcttgcaagagcggacagcgatg
gtaaaaatgatgtcatccagagctgatctgaagctgcccgagtttctctgcagtctgact
ctgggtcagaagctgaaggtgacagttggcactgtgaaagaggatgggagcgtgaccttt
gtgggagatgagctccctggggtcaccgtagtggccaagaagtaccatgtgactggtgtg
aaagtggctccaggagagaaagtcactgtggtggtactccatgtggacctgctggctctt
caggtccatgtgtccctcattcccgagttggtgggaaagaagaagcatcttgagacgggc
tccactctgccagcggcggtgcggtatctggaggaggagtttgctgtcatctcgctggct
gataaaggccacctgactgtggttcacacgactgcccatttgaatgaatcgttccgcttc
aagtctcagaagctggctgtggggagcagcctgagcgtcatcgtgaaggactccagctgt
gaagagcttggagggcttcctctggtgttacgggctgcactcgctgagggtgcccaaggt
cccaccctcgatgggtccgcgaagccctacaggatcggcaatgtggtgacgggcaccgtg
aaagcgattcgacccctctctatactcgtaagcttgccggacaacgtcaagggcagcatc
cacgtctctcagatcaaggatgtggtcagtccgggctcttaccccacctccaccgtgaag
aagggcagcacggtcactgccaaggtcatcggcaccaaggatgtggctgctcataattac
ctgccaatttcccatcctgcattcaagtttaccgtgcctgagctgaccatgttgccaagc
gtaatggaaggcaatgccagtttgcagggcgccaagatgatgaggaaactgaaaagatat
cgtcctggagacgaaatcacctgctatgtgtcaaagtataacatgcagaagaagtacctg
gaggtggaggtgtcccccttcatcagtggggttgtcgatttgttgctcatgactcttgac
cataaaaaactgaagcacccagagaagatgtatcgtacgggccaggcacttagcgctaaa
gtagctggacactcccatgtcccgaagcagctctccctgtctcttacaggtgtatacagc
ctcagcaccggggcggtgaccctcggcattgtgcggaaggtggtggcgcacagtggtctg
gcagtgtcactgcctttcggcaggtcagggttcgtgtctctgctggacctggctgactcc
tacagacccaaccccctggaaacgtacctggtcggcaccatcgtcaggtgctgcgtcatt
ggagaggacgacgggtctttgcagctgtctctccgtccgtccagggtgaaggccagctca
gcacctcctgtgagggatgtagaagttttgtccatcgacgatcttaaggaaggccagatt
gttcgtggttatgtcaaatccgtaggagactctggggtttttataaggctctccagatcc
atcacaggccttgcccgctaccaacagttgaccacctactttgtcaaagatcacagtgtg
tatgcaaagcacatacagctgagcggcctgtacaccaccaaagtggtgagtgtgaacaaa
gaaaaaggtcacgtggagctgtcactgctgccacaggacacagggaagcccgacgtcctc
ccagaatccctcggtttgcctctgcgtctcggcaggaaagagaataaggggaaaaggaag
agagcgcagtgtgaaagtaaacaagtgccgggcaagaatgtgaagaagacagacgtaaaa
tcggacgaaaatgacagcggagtagaagtgttcttccgggaagaagagaagcaggacaag
tcccggaaggcgtgccgtgctgtggagggggtggaggcgcagcccgtgaggctccacgtg
ccagggggcttttcgtgggatgcgtctctgagcagcctgcggcccactactgctgcgaag
gatgaggactccagtgacgaagaggaggctccagggcaaccccggaagaagagcaagaag
gacagagagctggagaagcagcaggaggagaagcggctgtcgcagctggagaatgagctg
atggacccgaacctgcagccacggagcgccaacgcctttgagcggctggtccttagctcg
ccagacagctccctggtgtggctgcagtacatggccttccacctccaggccactgagatt
gagcaggcccgcgccgtggccgagagggccctcaagaccatctccttcagggaggagcag
gagaagctcaacgtgtgggtggcgctgctcaacctggagaacctgtacgggtccgaggac
agcttgcacaaggtgtttgagagggcgctgcagtactgcgagccgctgcccgtctaccaa
cagctggcggacatctacaccacgtccaacaagcataaggaagccgagatgctgtataag
aacatggtgaagcgcttcagccaggacagggctgtgtggctcagctacgccaccttcctc
ctgaagcagggccagaacgactcagttcatgccctcttgcagagggcgctcaagagcctt
ccaaataaagagcatgtggatttaatagccaagtttgcccagctggaattcaaatatggt
gatgtggagcggggaaagtccatgttcgacaggaccctttcaaactaccccaagcgcacg
gatctgtggtccatatatatagatctgatgatcaaacatggaactcagaaagaagtgcgg
gagctgtttgaccgcgtgatccacctgagcgtggcggtgaagaggatcaagttcttcttc
aagcgctacctggagtacgagaagaagaacgggacgccagagagcgtgcaggctgtcaag
gagaaggcgctgcaatacgtggaggccaagggctcggcagcagccagctag
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integrated database retrieval system
