Scleropages formosus (Asian bonytongue): 108934128
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Entry
108934128 CDS
T04919
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04382
Cornified envelope formation
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04518
Integrin signaling
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108934128
04518 Integrin signaling
108934128
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108934128
09142 Cell motility
04820 Cytoskeleton in muscle cells
108934128
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108934128
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108934128
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108934128
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108934128
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108934128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108934128
NCBI-ProteinID:
XP_029106821
LinkDB
All DBs
Position
4:complement(38395585..38454002)
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AA seq
1702 aa
AA seq
DB search
MMMMMMMKKLRRICVLLLLVAGSAHGGAKNQEPCAGVDCSRGCVCNPEKGAAGQPGPLGP
QGVEGPQGFAGSAGPQGPKGEKGHMGIRGPSGPKGDKGPMGVPGFPGADGVPGYPGQSGG
RGPKGPDGCNGTAGDPGPRAQDGFPGRPGPPGPRGPKGQKGEAVYAGSGQGGEPGLPGLD
GLFGPRGPTGLPGFVGPRGPDGLAGLPGPPGPPGPTGSPGSRFKGESGEKGDPGQPGPPG
LQGQQTLAGAPESTILKGPKGDQGFKGLPGSPGIPGLPGPYGYPGEPGEKGVIGLPGGRG
ASGFIGPPGSQGRQGFPGSPGFPGQPGFPGFKGEPGDPGPPGPITYSDGGRAIQGPPGDR
GIGGLPGEPGDAGLPGIAGKPGFPGGPSSVPGQPGQQGFPGAAGPKGEKGSKGRPSTGFQ
GPPGKRGPPGPSGLPGPPGPVGPVPSATYGPPGQPGPRGPQGSPGFRGPKGDPGDCNCLG
GGGLGRQGPPGPPGPLGSPGLFGRKGEAGDPGVLGIPGPPGPKGVTGPRGYFGRKGEKGN
SFIPPGRGAKGDPGAPGLRGLPGDVGRPGRDGLRGFPGQPGPPGDSAFGVVGDRGVPGAP
GPKGRPGSPGDPGIGYPGPAGVRGSPGEPGIDGLPGQPGFPGPPGDCCCAQAGGSVPTFT
QGGTTLPCYITGEDSDPGPPGRSGKKGQKGQPGFLGTAGRPGFDGSKGERGDQGFGGQPG
PQGFSGPRGDPGPSGLPGEEGLLGPPGKNGLPGFSGEKGRPGEVYGASPGAPGLPGRPGE
AGGKGQPGTPGRPGEPGFDAPSGRPGAKGKRGVDGVPGIPGLPGLPWDGEEKGLPGIQGA
PGSKGFPGPPGCAGFAGQKGFSGDAGPPGPAGMKGQPGLSGFPGQPGLRGLPGTPGAPGR
DGNPGVPGTKGERGRPGLLGFPGVPGNRGIPGRTGIKGTPGFPGRDGSPGSFGFPGLKGE
RGDRGPSGPPSQLPLHEQLEKGDRGDAGPSGLSGFPGPRGDKGLPGQPGRRGQPGAPGFP
GRERGAPGAPGFPGIPSTRGIPGPKGFPGIMGFPGVPGLRGDDGSPGSRGFPGGPGLPGQ
KGERGESYSVPGAPGIKGLPGEPGFPGGRGNVGPPGEDGFPGNSGFSGQKGLQGEPGRPG
LTGTPGFPGSRGSPGFPGQRGLGGALGSPGSPGTWGQKGLPGSPGLNGLNGLGGPKGPPG
TPGLVEVGRPGTPGIPGLKGERGSSVAGVPGFPGVKGTKGEQGVPGIPGFPGNPGPRGHT
VFSNIPGFPGDPGLPGLDGEQGLSGPPGPPGPAGPGTAQGDRGDSGFPGYLGTPGPRGDS
GLPGSPGQPGRLGFKGERGDPGLSGIPGRVGFPGDPGFFGFKGQKGNKGQAGRKGLPGVP
VPIKIVPTPLGDPGIPGFPGITGEMGSHGQPGLPGPAGPTGRTGSKGKLGPDGPAGPPGP
RGDPGTPGFPGATGQQGFPGRQGPPGPPGISARSSSIGYTLVKHSQASQVPPCPQGMAKL
WEGYSLLYVEGQEKAHNQDLGLAGSCLPLFSTMPFLYCNIDELCYFASRNDKSYWLSTTA
PIPMMPVSGDQISQYISRCSVCEAPSQAAAFHSQDLSIPPCPQGWRSLWIGYSFLMHTAA
GAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTIRPEMQFVETPSQ
ETLKAGQLRSRVSRCQVCMKVL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgatgatgatgaagaagttgaggaggatttgtgtccttctgctgctcgtg
gcgggatcggcgcacgggggtgcgaagaaccaggagccctgtgcaggagtcgactgcagc
cgggggtgcgtctgtaacccggagaagggcgccgcgggtcagccggggcctctgggaccc
cagggggtggagggaccccaagggtttgcgggaagtgcaggaccccaagggcccaagggt
gaaaaaggccatatgggaatcagaggtccatctggtcccaaaggagacaaaggtccaatg
ggtgtgcccggtttcccaggagcggatggcgtaccaggctaccctggacagagcggagga
agaggacctaaaggaccggacgggtgcaacggcaccgccggcgacccgggtccgagggcg
caggacgggttcccgggccggccgggcccgccgggtccgaggggtccgaagggtcagaaa
ggagaagcggtctatgcgggaagtggccaaggcggggagcctggtttaccagggctggac
ggcctctttggtcctcgtggtccaactgggcttccgggtttcgttggtcccagaggtccg
gacggccttgctggtctccccggtccccccggccctcccggccccacaggaagccctggt
tctcgtttcaaaggagagagtggagagaagggggaccccggtcagccaggacccccggga
ctgcaagggcaacagacgctagcaggggcgccggaaagcaccatcctcaaaggacccaag
ggtgaccagggtttcaaggggttgccaggttccccaggaattccaggtttaccggggcct
tacgggtatccgggggagccgggcgagaagggggttattggactgccgggagggcggggc
gcatccggctttatcggaccccctgggtctcagggcagacagggcttccctgggagtcca
ggattccctgggcaacctggatttccaggatttaaaggggagcctggagaccccggcccc
ccggggcccatcacctattcggatggcggaagagctatacaaggaccccctggtgaccga
gggatcggtggcctccctggtgaaccaggtgacgcgggacttccaggcattgccggcaag
ccagggttcccaggaggcccatcttctgtcccaggtcaaccggggcagcagggattccca
ggtgccgccggacccaaaggagagaaaggaagcaaaggtcggccgagcactgggttccag
ggccccccaggaaaacgagggccacccggcccctcgggacttccgggtccaccgggccct
gtgggacccgttccatctgcaacatatggaccacctggccagccaggcccaagggggcca
caggggtcacctggattcagaggacctaaaggagatccaggggactgtaattgccttggg
ggagggggacttggacggcaagggccccctggccctccgggacccttgggttcaccggga
ctctttgggaggaaaggagaggcaggggatcctggtgtgctgggaatccctggtcctcca
gggccaaaaggtgtcaccggcccacggggctattttggccggaagggagagaagggcaat
tccttcattccgccgggccgtggcgcgaaaggtgatccgggtgctccgggactccgtggg
ctcccaggggacgtgggacgacccggtagagatggcctccgagggtttcctggacagccg
ggacctcctggtgacagtgcttttggagtggtcggcgacaggggtgtcccaggcgctcct
gggcccaagggacgcccgggcagtccaggtgatcccgggatcggatacccgggcccggca
ggagtccgcggctcgcccggcgagccgggtatcgacggccttccggggcagcccgggttc
ccgggtcccccaggcgactgttgctgtgcgcaggcggggggtagtgtgcccactttcact
cagggaggaacgaccttaccctgttacatcacgggtgaggacagtgatccgggaccacct
gggcgttctggaaagaaaggtcagaaaggtcagcctggtttcctcggaacagcagggcga
cccgggtttgacggctccaagggcgagcgtggagatcaaggctttggcggtcagcccgga
ccacaaggtttctcgggcccccgaggggacccagggccctcagggctaccgggcgaagag
ggtcttctaggtcctccaggaaagaatgggcttccgggtttcagtggggagaagggaagg
cccggtgaagtttatggagcttctcctggggcaccaggtctgcccggacgccccggagaa
gcaggtggaaagggacagcctgggacacctggacggcctggagaaccaggttttgatgca
ccctcagggcgtccgggggcaaaggggaaacgcggtgtggatggggtccctggaatcccg
ggcttgcctggcctaccttgggatggggaagagaaaggacttcctggaattcaaggagct
cctggaagcaagggtttcccaggtccaccaggctgtgcagggttcgccgggcaaaagggc
ttctctggtgacgctggaccccccgggccagctggaatgaagggccagccagggctttcg
gggttccctggtcagcctggactcaggggcctcccaggaacccccggtgccccaggaagg
gatggcaacccaggagtaccaggaacaaagggtgaaagggggaggcctggactcttagga
ttcccaggagttccagggaatcgaggcatacctggaagaaccggaatcaaagggacccca
ggatttcccggaagagatgggtctccaggaagctttggctttccaggactgaaaggggag
cggggagaccgtggtccatcggggccaccatctcaactcccgttacatgagcagctggag
aagggagaccgcggggacgcagggccaagtgggctgtcgggctttcctgggcccaggggt
gataaaggactgccaggccagccgggacgccggggccagccaggtgcgcctggtttcccc
ggccgggagagaggtgcgcctggtgcccctggttttcccgggatcccgtccacccggggc
atccctgggccgaaaggctttcccgggatcatgggattccctggtgttccaggactgagg
ggtgacgatggatctcctggatcacgtggattcccaggaggaccagggttgcctggtcag
aaaggtgaaaggggagaatcatacagcgtaccaggcgcacccggtattaaaggtctccct
ggcgaacccggattcccaggtggaagaggaaacgtcggtccgccaggagaagatggcttt
cctggaaactctggctttagtggacagaagggtctgcaaggagaaccgggtcgaccggga
ctgacgggtaccccagggttccctggcagtaggggttccccaggttttccgggacagagg
ggactgggaggtgcacttggttctcctggatctccaggcacatggggccagaaaggttta
cccggatctccaggactcaatggtctgaatggcctcggaggccctaagggaccaccagga
actccaggtctggttgaggttggtagaccagggaccccaggtattcctggcctgaagggg
gagagagggtcctctgtggcaggtgtacctggattccctggagttaaaggcaccaaagga
gagcaaggtgttcctgggataccaggatttcctggtaatcctggtcctagagggcacact
gttttctccaacatccctggttttcctggagaccctggccttcctgggttggatggagaa
caagggttatctggcccccctggtcctccgggtcctgctggcccaggcaccgcacaagga
gacaggggagattcagggttccctgggtaccttgggacaccaggaccccgtggagactca
gggctaccaggaagccctggacagcctggtagactgggctttaaaggcgaaagaggggac
cctgggttaagtggtataccaggaagggtcggcttccctggggaccctgggttctttggc
ttcaagggacaaaaggggaacaaaggtcaagcgggacgcaaaggtctccctggagtcccc
gttcctatcaagatcgttccaacaccactaggagacccaggcattcccggttttcctggc
ataactggggagatggggtcacacggtcaacctggtctacctggtccagcaggccccaca
ggcagaactggttctaagggcaagctgggacctgatggtccagctggacctccgggaccc
aggggagatccaggcaccccaggctttcctggagcaacagggcagcaaggtttccccggc
agacagggtccccccggcccccccggcatctcggcccgcagcagcagtattggatacaca
ctggtgaagcacagtcaggccagccaggttcccccctgtcctcagggtatggccaaactc
tgggaaggctacagtctgttgtacgtcgagggccaggagaaagcccacaaccaggacctg
ggccttgctggctcctgcctgcccctgttcagcaccatgcccttcctatactgcaacatc
gatgagctgtgctactttgcgagccgcaacgacaaatcctactggctgtccacgacggcg
cccatccccatgatgcctgtgtctggggaccagatctcccagtacatcagccgctgctcc
gtgtgcgaggccccctctcaggcagcggccttccacagccaggacctcagcatccctcct
tgtccacagggctggaggagcctctggattggctactccttcctcatgcacacagcagct
ggggcagagggtggaggtcagtccctggtttcccctggttcctgcctggaggacttccgt
gccacgcccttcatcgagtgcagcggcgcccgcggcacctgccactacttcgccaacaag
tacagcttctggctcactaccatcaggcccgagatgcagttcgtggagaccccgtcccaa
gagacgctgaaggcagggcagctgcgctcacgcgtcagccgctgccaggtctgcatgaag
gtcctgtag
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integrated database retrieval system
