Scleropages formosus (Asian bonytongue): 108934128
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Entry
108934128 CDS
T04919
Name
(RefSeq) collagen alpha-6(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108934128
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108934128
09142 Cell motility
04820 Cytoskeleton in muscle cells
108934128
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108934128
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108934128
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108934128
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108934128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108934128
NCBI-ProteinID:
XP_029106821
LinkDB
All DBs
Position
4:complement(38395585..38454002)
Genome browser
AA seq
1702 aa
AA seq
DB search
MMMMMMMKKLRRICVLLLLVAGSAHGGAKNQEPCAGVDCSRGCVCNPEKGAAGQPGPLGP
QGVEGPQGFAGSAGPQGPKGEKGHMGIRGPSGPKGDKGPMGVPGFPGADGVPGYPGQSGG
RGPKGPDGCNGTAGDPGPRAQDGFPGRPGPPGPRGPKGQKGEAVYAGSGQGGEPGLPGLD
GLFGPRGPTGLPGFVGPRGPDGLAGLPGPPGPPGPTGSPGSRFKGESGEKGDPGQPGPPG
LQGQQTLAGAPESTILKGPKGDQGFKGLPGSPGIPGLPGPYGYPGEPGEKGVIGLPGGRG
ASGFIGPPGSQGRQGFPGSPGFPGQPGFPGFKGEPGDPGPPGPITYSDGGRAIQGPPGDR
GIGGLPGEPGDAGLPGIAGKPGFPGGPSSVPGQPGQQGFPGAAGPKGEKGSKGRPSTGFQ
GPPGKRGPPGPSGLPGPPGPVGPVPSATYGPPGQPGPRGPQGSPGFRGPKGDPGDCNCLG
GGGLGRQGPPGPPGPLGSPGLFGRKGEAGDPGVLGIPGPPGPKGVTGPRGYFGRKGEKGN
SFIPPGRGAKGDPGAPGLRGLPGDVGRPGRDGLRGFPGQPGPPGDSAFGVVGDRGVPGAP
GPKGRPGSPGDPGIGYPGPAGVRGSPGEPGIDGLPGQPGFPGPPGDCCCAQAGGSVPTFT
QGGTTLPCYITGEDSDPGPPGRSGKKGQKGQPGFLGTAGRPGFDGSKGERGDQGFGGQPG
PQGFSGPRGDPGPSGLPGEEGLLGPPGKNGLPGFSGEKGRPGEVYGASPGAPGLPGRPGE
AGGKGQPGTPGRPGEPGFDAPSGRPGAKGKRGVDGVPGIPGLPGLPWDGEEKGLPGIQGA
PGSKGFPGPPGCAGFAGQKGFSGDAGPPGPAGMKGQPGLSGFPGQPGLRGLPGTPGAPGR
DGNPGVPGTKGERGRPGLLGFPGVPGNRGIPGRTGIKGTPGFPGRDGSPGSFGFPGLKGE
RGDRGPSGPPSQLPLHEQLEKGDRGDAGPSGLSGFPGPRGDKGLPGQPGRRGQPGAPGFP
GRERGAPGAPGFPGIPSTRGIPGPKGFPGIMGFPGVPGLRGDDGSPGSRGFPGGPGLPGQ
KGERGESYSVPGAPGIKGLPGEPGFPGGRGNVGPPGEDGFPGNSGFSGQKGLQGEPGRPG
LTGTPGFPGSRGSPGFPGQRGLGGALGSPGSPGTWGQKGLPGSPGLNGLNGLGGPKGPPG
TPGLVEVGRPGTPGIPGLKGERGSSVAGVPGFPGVKGTKGEQGVPGIPGFPGNPGPRGHT
VFSNIPGFPGDPGLPGLDGEQGLSGPPGPPGPAGPGTAQGDRGDSGFPGYLGTPGPRGDS
GLPGSPGQPGRLGFKGERGDPGLSGIPGRVGFPGDPGFFGFKGQKGNKGQAGRKGLPGVP
VPIKIVPTPLGDPGIPGFPGITGEMGSHGQPGLPGPAGPTGRTGSKGKLGPDGPAGPPGP
RGDPGTPGFPGATGQQGFPGRQGPPGPPGISARSSSIGYTLVKHSQASQVPPCPQGMAKL
WEGYSLLYVEGQEKAHNQDLGLAGSCLPLFSTMPFLYCNIDELCYFASRNDKSYWLSTTA
PIPMMPVSGDQISQYISRCSVCEAPSQAAAFHSQDLSIPPCPQGWRSLWIGYSFLMHTAA
GAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTIRPEMQFVETPSQ
ETLKAGQLRSRVSRCQVCMKVL
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgatgatgatgaagaagttgaggaggatttgtgtccttctgctgctcgtg
gcgggatcggcgcacgggggtgcgaagaaccaggagccctgtgcaggagtcgactgcagc
cgggggtgcgtctgtaacccggagaagggcgccgcgggtcagccggggcctctgggaccc
cagggggtggagggaccccaagggtttgcgggaagtgcaggaccccaagggcccaagggt
gaaaaaggccatatgggaatcagaggtccatctggtcccaaaggagacaaaggtccaatg
ggtgtgcccggtttcccaggagcggatggcgtaccaggctaccctggacagagcggagga
agaggacctaaaggaccggacgggtgcaacggcaccgccggcgacccgggtccgagggcg
caggacgggttcccgggccggccgggcccgccgggtccgaggggtccgaagggtcagaaa
ggagaagcggtctatgcgggaagtggccaaggcggggagcctggtttaccagggctggac
ggcctctttggtcctcgtggtccaactgggcttccgggtttcgttggtcccagaggtccg
gacggccttgctggtctccccggtccccccggccctcccggccccacaggaagccctggt
tctcgtttcaaaggagagagtggagagaagggggaccccggtcagccaggacccccggga
ctgcaagggcaacagacgctagcaggggcgccggaaagcaccatcctcaaaggacccaag
ggtgaccagggtttcaaggggttgccaggttccccaggaattccaggtttaccggggcct
tacgggtatccgggggagccgggcgagaagggggttattggactgccgggagggcggggc
gcatccggctttatcggaccccctgggtctcagggcagacagggcttccctgggagtcca
ggattccctgggcaacctggatttccaggatttaaaggggagcctggagaccccggcccc
ccggggcccatcacctattcggatggcggaagagctatacaaggaccccctggtgaccga
gggatcggtggcctccctggtgaaccaggtgacgcgggacttccaggcattgccggcaag
ccagggttcccaggaggcccatcttctgtcccaggtcaaccggggcagcagggattccca
ggtgccgccggacccaaaggagagaaaggaagcaaaggtcggccgagcactgggttccag
ggccccccaggaaaacgagggccacccggcccctcgggacttccgggtccaccgggccct
gtgggacccgttccatctgcaacatatggaccacctggccagccaggcccaagggggcca
caggggtcacctggattcagaggacctaaaggagatccaggggactgtaattgccttggg
ggagggggacttggacggcaagggccccctggccctccgggacccttgggttcaccggga
ctctttgggaggaaaggagaggcaggggatcctggtgtgctgggaatccctggtcctcca
gggccaaaaggtgtcaccggcccacggggctattttggccggaagggagagaagggcaat
tccttcattccgccgggccgtggcgcgaaaggtgatccgggtgctccgggactccgtggg
ctcccaggggacgtgggacgacccggtagagatggcctccgagggtttcctggacagccg
ggacctcctggtgacagtgcttttggagtggtcggcgacaggggtgtcccaggcgctcct
gggcccaagggacgcccgggcagtccaggtgatcccgggatcggatacccgggcccggca
ggagtccgcggctcgcccggcgagccgggtatcgacggccttccggggcagcccgggttc
ccgggtcccccaggcgactgttgctgtgcgcaggcggggggtagtgtgcccactttcact
cagggaggaacgaccttaccctgttacatcacgggtgaggacagtgatccgggaccacct
gggcgttctggaaagaaaggtcagaaaggtcagcctggtttcctcggaacagcagggcga
cccgggtttgacggctccaagggcgagcgtggagatcaaggctttggcggtcagcccgga
ccacaaggtttctcgggcccccgaggggacccagggccctcagggctaccgggcgaagag
ggtcttctaggtcctccaggaaagaatgggcttccgggtttcagtggggagaagggaagg
cccggtgaagtttatggagcttctcctggggcaccaggtctgcccggacgccccggagaa
gcaggtggaaagggacagcctgggacacctggacggcctggagaaccaggttttgatgca
ccctcagggcgtccgggggcaaaggggaaacgcggtgtggatggggtccctggaatcccg
ggcttgcctggcctaccttgggatggggaagagaaaggacttcctggaattcaaggagct
cctggaagcaagggtttcccaggtccaccaggctgtgcagggttcgccgggcaaaagggc
ttctctggtgacgctggaccccccgggccagctggaatgaagggccagccagggctttcg
gggttccctggtcagcctggactcaggggcctcccaggaacccccggtgccccaggaagg
gatggcaacccaggagtaccaggaacaaagggtgaaagggggaggcctggactcttagga
ttcccaggagttccagggaatcgaggcatacctggaagaaccggaatcaaagggacccca
ggatttcccggaagagatgggtctccaggaagctttggctttccaggactgaaaggggag
cggggagaccgtggtccatcggggccaccatctcaactcccgttacatgagcagctggag
aagggagaccgcggggacgcagggccaagtgggctgtcgggctttcctgggcccaggggt
gataaaggactgccaggccagccgggacgccggggccagccaggtgcgcctggtttcccc
ggccgggagagaggtgcgcctggtgcccctggttttcccgggatcccgtccacccggggc
atccctgggccgaaaggctttcccgggatcatgggattccctggtgttccaggactgagg
ggtgacgatggatctcctggatcacgtggattcccaggaggaccagggttgcctggtcag
aaaggtgaaaggggagaatcatacagcgtaccaggcgcacccggtattaaaggtctccct
ggcgaacccggattcccaggtggaagaggaaacgtcggtccgccaggagaagatggcttt
cctggaaactctggctttagtggacagaagggtctgcaaggagaaccgggtcgaccggga
ctgacgggtaccccagggttccctggcagtaggggttccccaggttttccgggacagagg
ggactgggaggtgcacttggttctcctggatctccaggcacatggggccagaaaggttta
cccggatctccaggactcaatggtctgaatggcctcggaggccctaagggaccaccagga
actccaggtctggttgaggttggtagaccagggaccccaggtattcctggcctgaagggg
gagagagggtcctctgtggcaggtgtacctggattccctggagttaaaggcaccaaagga
gagcaaggtgttcctgggataccaggatttcctggtaatcctggtcctagagggcacact
gttttctccaacatccctggttttcctggagaccctggccttcctgggttggatggagaa
caagggttatctggcccccctggtcctccgggtcctgctggcccaggcaccgcacaagga
gacaggggagattcagggttccctgggtaccttgggacaccaggaccccgtggagactca
gggctaccaggaagccctggacagcctggtagactgggctttaaaggcgaaagaggggac
cctgggttaagtggtataccaggaagggtcggcttccctggggaccctgggttctttggc
ttcaagggacaaaaggggaacaaaggtcaagcgggacgcaaaggtctccctggagtcccc
gttcctatcaagatcgttccaacaccactaggagacccaggcattcccggttttcctggc
ataactggggagatggggtcacacggtcaacctggtctacctggtccagcaggccccaca
ggcagaactggttctaagggcaagctgggacctgatggtccagctggacctccgggaccc
aggggagatccaggcaccccaggctttcctggagcaacagggcagcaaggtttccccggc
agacagggtccccccggcccccccggcatctcggcccgcagcagcagtattggatacaca
ctggtgaagcacagtcaggccagccaggttcccccctgtcctcagggtatggccaaactc
tgggaaggctacagtctgttgtacgtcgagggccaggagaaagcccacaaccaggacctg
ggccttgctggctcctgcctgcccctgttcagcaccatgcccttcctatactgcaacatc
gatgagctgtgctactttgcgagccgcaacgacaaatcctactggctgtccacgacggcg
cccatccccatgatgcctgtgtctggggaccagatctcccagtacatcagccgctgctcc
gtgtgcgaggccccctctcaggcagcggccttccacagccaggacctcagcatccctcct
tgtccacagggctggaggagcctctggattggctactccttcctcatgcacacagcagct
ggggcagagggtggaggtcagtccctggtttcccctggttcctgcctggaggacttccgt
gccacgcccttcatcgagtgcagcggcgcccgcggcacctgccactacttcgccaacaag
tacagcttctggctcactaccatcaggcccgagatgcagttcgtggagaccccgtcccaa
gagacgctgaaggcagggcagctgcgctcacgcgtcagccgctgccaggtctgcatgaag
gtcctgtag
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