Scleropages formosus (Asian bonytongue): 108934381
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Entry
108934381 CDS
T04919
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03440
Homologous recombination
sfm03450
Non-homologous end-joining
sfm04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108934381 (rad50)
03450 Non-homologous end-joining
108934381 (rad50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
108934381 (rad50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfm03032
]
108934381 (rad50)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108934381 (rad50)
DNA replication proteins [BR:
sfm03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
108934381 (rad50)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
108934381 (rad50)
BRCA1-C complex
108934381 (rad50)
NHEJ (non-homologous end-joining)
MRX complex
108934381 (rad50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
ABC_tran
AAA_29
zf-met
Intein_splicing
AAA_22
AAA_13
AAA_16
Motif
Other DBs
NCBI-GeneID:
108934381
NCBI-ProteinID:
XP_018607616
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All DBs
Position
4:complement(33600527..33616674)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIEKMSILGVRSFGVEDKDKQVISFFSPLTVLVGPNGAGKTTIIECLKYVTSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGDVVAVQRSMQCTQKGKKIEFKTLEGVITR
VKHGEKVSLSSKCAEIDREMITALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLETLRQLRLKQSNCVKSCQMELKYLKQNKEKAQEIRDLLTSKESQLASSKES
VQRIEGQIEPLENRLMDIDSSLSKVMKLDNDIKALESRKKQMEEDNRELEEKMEQVFQGS
DEKLQEMYQNHQRTVREKERRLAECQRDIERANRECQRLNRLKSELLVEQGRLQLQADRH
AQNMKNRDSQVKALAMSLEMDGYERTPFSERQLQSFHRQVKERQDKETEALSQVLKDLQE
KETMKQQSIDEIRDKKTGLERTIELKMDLQTKKQQELKNVKEELQKLEGSSSRLQELELE
LVKAERELENALQASNVEELKGEVQELQREKAELDKVQRKLDQEMETLNAHTMTRTQMEM
LKKDKAEKDEQVRKIKSRHNEDLVSLLGYFPNKRQLEDWIHTKNKEIQSTREKLFKLNKD
LASSEQNKTHCSMLIRQKEQQVANYEEQLFNVCGSQDFQSDLTKLQDDLEKCSKQRAMLA
GATAVYTQFISQLTEEGEPCCPVCQRTFPSESELQDVINDMQSKLRLVPDKLKNTELELK
RKERKRDEMMALKPIRQSLSEFQERELPELRNKLQGINREIERLKNDVEEQETLLSTLIS
EEETAKACLQDISLMDRYQLDLKEVERKIAQHAAKLQGVDLSRTVQQVRQEKQETQHRID
TTSSKIELKRKLIQDQQDQIQALKSNVNETRAEKLLISSNMQQQQQLESQCVEFSTEIQS
LYRDIREAKEQVYPLSAMLEKLQQEKQELIDRRKQKQEEGQEKINAVKDRLRNITLFEKE
IEKYITEGKDEYKEQKEAELQETSTQLHEAEKQREKIHKDMGDIRQDIDTQKVQERWLQD
NLTLRKRMEELQEVSEKRKALMKEMGDMQVLQLRNERREVERKVEDLKKNRSVALGRQKG
FEEEIMRFRKELREEQYCQAEERFRDKMIVMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRTYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAEAFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLIITHDEDFVELLGRSNYVEHFYRIRKNIDQCSEISKCSVSSLTSHLN
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaaattgagaagatgagcatccttggtgtgaggagttttggagtggaggataaa
gacaaacaagtgatatcattcttcagtccattgacagtgttagttgggcccaatggggcc
ggtaaaacgaccatcattgaatgtttaaaatatgttacatcaggcgactttccaccaggg
agtaaaggcaacacttttgttcatgatccaaaggatgctcatgagacagatgttcgggcc
cagatccgcctgcagttccgagatgtcaatggagacgtggtggctgtgcaaagatcgatg
cagtgcacccagaagggcaaaaagattgagttcaaaaccttggagggggtcataacccgg
gtcaagcatggggagaaagtgagcctgagttcaaaatgtgcggagatcgacagagagatg
atcacagcgctgggagtttccaaggccgtcctcaaccacgttattttctgccatcaagag
gaatccaactggcccttgagcgaagggaaagccctaaaacaaaagtttgatgagatcttt
tctgcaacaaggtacatcaaggtgctggaaactctgcggcagctgcggttgaagcagtcc
aactgtgtgaaatcctgccagatggagctgaagtacctgaaacagaataaggagaaggcc
caggagatacgagacctgctcaccagcaaggaatcacagctggcttcttccaaggaaagt
gtccagcgcattgagggccagatagagccactggagaatcgactgatggacattgacagt
agtctcagcaaagtgatgaagctggacaatgatataaaggcattagagagcagaaagaaa
cagatggaggaggacaatcgggaattggaagagaaaatggagcaggtttttcagggttca
gatgagaaattgcaggaaatgtaccaaaaccatcagagaactgtacgggagaaagagcgg
cgcctagcagagtgtcagcgtgacatagaacgtgccaaccgagagtgccaaaggctgaat
cgcctcaaatctgagctgctggtggaacagggtcgtctccagctgcaagcagaccgccat
gcccagaatatgaaaaaccgtgactcgcaagtgaaggcactggctatgtctcttgagatg
gatggttatgagaggacaccattcagtgagaggcaactgcaaagtttccaccggcaggtg
aaagagaggcaggacaaggagacggaggcactcagccaggtcttgaaagatttgcaagag
aaggaaacaatgaaacaacaaagcattgacgaaattcgagacaagaagacgggactggag
cggactattgagttgaaaatggatctgcagaccaagaagcaacaggagctgaagaatgtg
aaggaggaattgcagaagctagaaggatcttcctcacgcctgcaggagcttgagttggag
ctggtcaaagcggagcgagagctggagaatgctcttcaggcctctaatgtagaggagctg
aagggagaagtccaagaactccagagagagaaggctgagctggacaaagtgcagcgcaag
ctggaccaggaaatggagacactcaacgctcacacgatgactcggacacagatggaaatg
ctgaagaaggacaaggcagaaaaagatgaacaagtgaggaaaatcaagtccaggcacaac
gaggaccttgtctctttgcttggctactttcccaacaaaagacagctggaggactggatc
catactaaaaataaagagatccaatccaccagggaaaagcttttcaaacttaacaaggat
ctggcctccagtgagcagaacaagacccattgcagcatgctgatcagacagaaggagcaa
caggtagccaactatgaggagcagcttttcaatgtgtgtggcagccaggactttcagagt
gacctcaccaagctgcaggacgacctggagaaatgctcaaagcagagagctatgctagcg
ggtgccacggctgtatacactcagttcatcagccagctgacagaggaaggtgagccctgc
tgccccgtgtgtcagcgcaccttcccgtcagaatctgagctccaggatgtcatcaacgac
atgcagtccaagctccggctagttcctgataagctcaagaacacagagctggagctgaag
aggaaggagaggaagcgcgatgagatgatggcacttaaacccatacggcaatctttatct
gagtttcaagagcgtgaattaccggaactgcggaacaagctgcagggcatcaaccgtgag
attgagcggctgaagaatgatgtggaggagcaggagaccctgttgtccacgctgatatct
gaggaggagacagccaaagcctgtctgcaggacatatccctgatggacaggtaccagttg
gacctgaaggaggtggagcgtaagattgcccagcatgctgcgaaactgcagggagtggac
ctgagccgcacagtccagcaggtcaggcaggagaagcaagagacccagcaccgcatagac
acaacatccagcaaaatagagctgaagcggaagctgattcaagaccagcaggaccagatc
caagctctgaaaagtaacgtgaatgagacaagggcggagaagctgctcatctccagcaat
atgcagcagcagcagcagttggagagccagtgtgtggagttctccacagagatccagtcc
ctgtacagagacatcagggaagctaaagagcaggtgtaccctctgtctgccatgctggaa
aagctgcagcaggagaaacaggagctcatagatcgcaggaagcagaagcaggaggagggg
caagagaaaataaatgctgtcaaggacaggctgagaaacatcaccctctttgagaaagag
attgagaagtacatcacagagggcaaggacgagtacaaggagcaaaaagaggctgaactg
caagagaccagcacccagctgcatgaggcagagaagcagcgtgagaagatccataaagac
atgggggacatcaggcaggacattgacacgcagaaggtccaagagcgctggcttcaggac
aacctgacactgagaaagcgtatggaggagctgcaggaggtgtccgagaagcgcaaggcc
ttaatgaaggagatgggggatatgcaggttctgcagctccgaaatgagcgcagggaggtc
gaacggaaggtagaggacctcaagaagaatcgcagcgtagctttgggaaggcagaagggc
ttcgaggaggagatcatgcgcttccgtaaggaactgcgggaggagcagtactgccaggcc
gaggagcgcttcagagacaagatgatcgtcatgcgcactacagagctggccaacaaggac
ctggacatctattataaggctcttgaccaaaccataatgaagtttcatagcatgaagatg
gaggagattaataaaatcatccgagatctgtggcgtagcacatatcgtggacaagacatc
gaatacgtggagatccgctctgacgtggatgagaacgcctcagcgggcgtgaagaggaga
acctataactaccgcgtcgtgatggtgaaaggtgacacagcactggacatgaggggacgc
tgcagtgctggacaaaaggttctagcatcgctcatcatccgcctcgccttggctgaggcg
ttctgtctgaactgcggcatcctggctctggatgagcccaccaccaatctggaccgagaa
aacattgagtccctggcccatgccctagtggagattatcaaaagccgctcccgacaacgc
aacttccagctactcatcataacccacgatgaagactttgtggagctccttggtcgctct
aactatgtggagcacttctacaggatcaggaagaacatcgatcagtgctcagagatttca
aagtgcagcgtgtcctctttgacttcccatctgaactaa
DBGET
integrated database retrieval system
