Scleropages formosus (Asian bonytongue): 108934695
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Entry
108934695 CDS
T04919
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108934695 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108934695 (dhx38)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108934695 (dhx38)
Spliceosome [BR:
sfm03041
]
Complex C
Other components
Step II factors
108934695 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
108934695
NCBI-ProteinID:
XP_018608252
UniProt:
A0A8C9WGD7
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All DBs
Position
11:5682938..5698421
Genome browser
AA seq
1259 aa
AA seq
DB search
MEDEASLHRLEGSNPCTQVGGLIVNKKSAAAEQHIFRAPTPRTSLLGLDLLAAQKRKQRE
ENNRKDEADDDDDDDDDEKKTKKSKVSSYKDWEDGRGDSGSDEEENKEESKADRKERKYR
VTGSETPSNPGGVSEEFRQKHQQREKEWREHGVYASSKEEKKRDKERDRDRERRDERDRS
QQSSRAGSERGERSERGERSQREGWSERLSRGSRREEPETPRHRPRDAPTPSRSSWDEDD
SGYASSRRSHWESPSPAPSYRESDRSERSHRSGRDSERRDRDRSVRNRYPEDTPLPTPSY
KYNEWANDRKHLGSTPRLSRGKGSKRDGEEDGITFDNEEERQQWEEDQRQADRDWYMMDE
GYDEFHNPLTSSSEEYVKKREQMLQKQTQKRISAQKRQINEDNERWETNRMLTSGVVQRL
EVDEDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLV
RKHREQKERKKAQHKHWELAGTKLGDIMGIKKTEEDDGTAGRPVGEDGTVDYRAEQKFAD
HMKEKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQ
YLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEIGSNLGEEVGYAIRFEDCTSEKTMIKY
MTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSATM
DSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMHGDILIFM
PGQEDIEVTSDQIVERLEDLESAPPLAVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNI
AETSLTVDGIMFVIDSGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQCYR
LYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQL
WILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMGCSSDILIIVSMLSVPAIFYRP
KGREEESDQVREKFAVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVREVRAQ
LKDIMVQQRLNLVSCGSEWDVIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSL
FGMGYTPDYIIYHELVMTTKEYMQCVTAVEGEWLAELGPMFYSIKHAGKSRQENRRRARE
EISIMEEEMSLAEQQLRARREEQERKSNMGSARSIKICTPGRKEETPMTPKHTPARFGL
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgaagcctcactgcaccggctggaaggcagcaatccctgtactcaggtcggg
gggctaattgtgaataagaagagcgcggcagcagagcagcacatcttccgggctcccact
cctcgcacgtccctgctgggtctggatctcctggcagcacagaagcgcaagcagcgtgag
gagaacaaccgaaaggatgaagctgatgatgatgatgatgatgatgatgatgaaaagaag
acaaagaagtctaaggtgtcatcatataaggactgggaggatggtagaggtgactcagga
tctgatgaggaagaaaataaagaagaaagcaaggctgacaggaaggagaggaaatatcgt
gtgactggctctgaaacaccgtcaaaccctggaggggttagcgaagagttccggcagaaa
caccagcagcgggagaaagaatggcgtgaacacggagtttacgcctcctcaaaagaggag
aagaaacgggataaggagagagatcgcgacagggagcgaagagacgagcgggatcgcagc
cagcaaagtagcagggctggctccgagaggggtgagcgcagtgagcggggggaacgttca
cagagggagggttggtctgaacgcctcagccggggcagcaggagagaggagcctgagaca
cccagacaccggcccagagatgctccgactccctcccgatccagctgggatgaggatgat
agtggctacgccagctctcgacgctcccactgggagtccccctccccagctccctcatac
cgggagtccgacaggtctgagcgcagccatcgctcaggtcgggacagtgaaaggagggac
cgagataggtctgttaggaaccggtaccctgaagacacccctctgccaactccctcctac
aagtacaacgagtgggccaatgacaggaagcatttgggctccaccccccgtctgtcccgt
ggaaaagggagcaagagggatggggaagaagacggaatcacttttgacaatgaggaagag
aggcagcagtgggaggaggaccagcggcaagccgaccgggactggtacatgatggacgag
ggctacgacgaattccacaacccactgacctccagttcagaggagtacgtgaagaagaga
gagcagatgctgcagaagcagacccagaagcgcatctcggcccagaagaggcagatcaac
gaggacaatgaacgctgggaaacaaaccgcatgttgactagcggtgtggtgcagaggctg
gaggtggatgaggactttgaggaggacaatgctgccaaagtccaccttctggtccacaat
ctggtgcctcctttcctggatggcagaattgtcttcaccaagcagcctgaaccggtcata
ccagtgaaagacgccacatctgacatggccatcatctcccgcaagggcagccagctggtc
cgtaagcaccgtgagcagaaggagcggaagaaggctcagcacaaacactgggagctagca
gggaccaagctgggtgacattatgggcatcaaaaagacagaggaggatgacggcactgca
ggcagacctgttggtgaggatggcactgtggactacagagcagagcagaagtttgccgac
cacatgaaggaaaagagtgaggccagcagtgagtttgccaagaagaagacattgctggaa
cagagacagtatcttcccatcttcgctgtcagacaacagctgctcaacatcatcagggac
aacagcattgtgattgtggtgggagagacgggcagtgggaagaccacacagctgacccag
tatctccatgaggatggctacacgagctatgggatggtgggctgcacgcagccccgcagg
gtggccgccatgagtgtagccaagcgagtcagcgaggagattggcagcaacctgggggag
gaggtgggttacgcgatccgcttcgaggactgcacctcggagaaaactatgatcaaatac
atgacggacggcattctgctcagggagtctctgcgcgagtcggacctggaccactatagt
gccgtaattatggacgaggcacacgagcgctcgctcaacacagacgtgctctttggccta
cttcgggaggtcgtttcccggcgctccgacctgaagctcattgtcacttccgccacgatg
gactcagacaagtttgcagcgttcttcggcaatgttcctatattccacattcctggaaga
acattcccagtggacatcttgttcagcaagactcctcaggaggactacgtggaggcagct
gtgaaacaggccctgcagatccaccttagtgggatgcatggtgatatcctcatcttcatg
cctggccaggaggacatcgaggtgacctctgaccagatagtggagcgcctggaggacttg
gaaagtgctccaccactggctgtgctcccaatctactcccagctgccttcagacttgcag
gccaagatcttccagaaggcgcccgatggcgtgcggaagtgcattgtggccacaaacatt
gcagaaacatccctcactgtcgacggcatcatgtttgtcattgactctggttattgcaag
ctcaaggtgttcaacccacgcattggtatggatgccctgcaggtatatcccatcagccag
gccaacgctaaccagcgcgcaggcagagccgggaggacgggaccaggccagtgctacagg
ctgtacacccagagtgcctttaagaatgagatgctgaccaccaccatccccgagatccag
cgtaccaacctagccaacgtggtgctgctgctcaagtccctgggcgtacaggacctcctg
ctcttccacttcatggatccgccccctgaggacaacatgctcaactccatgtaccagctg
tggatcctgggagcgctggacaacaccggagcgctcacccccactggacgcctcatggta
gaattccccctggacccagcactgtccaagatgctcattgtatcctgcgatatgggctgc
agttctgacatcctcatcattgtctccatgctctcagttcccgccatcttctacagaccc
aagggccgcgaggaggagagcgaccaggtgagggagaagtttgctgttccagagagtgac
cacctgacatacctcaacgtctacctgcagtggaagaacaacaactactcgagcatctgg
tgcaacgagcacttcattcacaccaaggcgatgcgcaaggtgcgggaagttcgggctcag
ctcaaagacatcatggtccagcagaggctcaatcttgtctcgtgtggttctgaatgggat
gttatcaggaagtgcatctgtgccgcctacttccaccaggctgccaagctcaagggcatc
ggggagtacgtgaacgtgcgaacggggatgccctgccacttgcacccaactagctccctc
ttcggcatgggctacacgccagattacatcatataccacgagctggtcatgaccaccaag
gagtacatgcagtgtgtgacggctgtggaaggggagtggctggccgaactgggtcccatg
ttctacagcatcaaacacgccgggaagtctagacaggagaaccgccgccgtgccagggag
gagatctccatcatggaggaggagatgtcgttggcggagcagcagctgagggcccgcagg
gaggagcaagagaggaagagcaatatgggaagtgccaggtccataaaaatctgcacccca
ggcagaaaggaggagaccccaatgacgccgaaacacaccccagctcgatttggcctttga
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integrated database retrieval system
