Scleropages formosus (Asian bonytongue): 108935012
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Entry
108935012 CDS
T04919
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04115
p53 signaling pathway
sfm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108935012 (cop1)
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
108935012 (cop1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfm04121
]
108935012 (cop1)
Enzymes [BR:
sfm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108935012 (cop1)
Ubiquitin system [BR:
sfm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108935012 (cop1)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
108935012 (cop1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
zf-RING_2
Beta-prop_EML
Beta-prop_DCAF4
zf-RING_UBOX
zf-RING_5
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
RING_XB3-XBAT31
zf-C3HC4_4
WD40_RFWD3
WD40_like
Beta-prop_WDR35_TULP_N
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-RING_10
WDR90_beta-prop_4th
zf-rbx1
Sina_RING
UvrD-helicase
zf_C2H2_10
Prok-RING_4
TRAF3_RING
zf-Nse
Motif
Other DBs
NCBI-GeneID:
108935012
NCBI-ProteinID:
XP_029106498
UniProt:
A0A8C9VXR8
LinkDB
All DBs
Position
3:complement(12775368..12798214)
Genome browser
AA seq
712 aa
AA seq
DB search
MSGSRQNGSAAGSGPGNSGGSTSSSSVNSLHSMNINNNSSSSSSNGTSSVPGVSSRTLGT
GGEGLQVPTLGVPSRAAAVSPGRPGSSSAGGSRKRPLQAPLCNGLINSYEDKSNDFVCPI
CFEMIEEAHMTKCGHSFCNKCIRQSLEDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQ
RSEEKRLKLDYPNGHRWQVFQDVLSTDQENLDLANVNFMLELLLQKKKQLEAESQAAQLQ
ILMEFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPTKDMDLDSTVPQFEAHS
PAHSSIIDSADYTQPPGFGGSSQGKRQTWYNSTLASRRKRLTAHFDDLEQCYFSNRMSRL
TDDGRTVNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIA
GVTKKIKVFEYGTVIQDAVDIHYPINEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD
GFTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVC
CVKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTD
SQLKLWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFK
FDTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcagccgacagaatggctcagcagcgggctctgggcctgggaacagcggcggc
agtactagcagcagcagtgtgaacagtctgcacagtatgaacattaacaacaacagcagc
agcagttcgagtaatgggaccagttcagtccccggagtgtcttcacgaacactgggaaca
ggcggagaggggctgcaagtccccacgctcggggtcccgtccagagccgccgcagtgtcc
ccaggcagaccgggctcgtcctcggcgggcggcagccgcaagcggcccctgcaagcaccg
ctgtgcaatggcctcatcaactcgtacgaggacaagagcaacgacttcgtctgccctata
tgttttgaaatgatcgaagaggctcatatgactaagtgtgggcacagtttctgcaataag
tgtattcggcagagtctggaagacagcaatcgatgcccaaagtgtaactacataattgat
aatgtagatcagttatatcccaactttttagtgaatgaacttattctgaaacaaaagcag
agatctgaggaaaagcgccttaaactagattatccgaatggccacaggtggcaagttttc
caagatgttctcagtacagaccaagagaacttagatcttgcaaatgtcaactttatgttg
gagctccttttacagaaaaagaagcagcttgaagcggaatcgcaagcagcccaacttcag
atcttgatggagtttcttaaagaagcaagaagaaataagcgtgagcaacttgagcagtta
cagaaggagctgaactttttagaagaagacatcaaacgagttgaagaaatgagtgggctg
tactcccctacgaaggacatggacctggatagcactgttcctcaatttgaagctcattcc
ccagcacacagcagtattatagattctgccgattacactcaacctccaggctttggtggt
agctcccaggggaagagacaaacatggtacaacagcactctggcgtcacggcggaaaagg
cttacagcccactttgacgacttggagcaatgctacttctctaacaggatgtccaggtta
acggatgatggtagaactgtaaatcagcttgatgattttatggaatgtctatccaagttc
acacgctacaactctgtgaggcctcttgctacactttcttatgccagtgacctctacaac
ggctccagtattgtatccagtattgaatttgaccgtgactgtgattactttgccattgct
ggcgtcaccaagaaaattaaagtgtttgaatatggaacagtaatccaggatgcagtggac
attcattatcccatcaatgaaatgacatgcaactcaaaaataagctgtattagctggagt
agctaccacaaaaatctgctagcaagcagtgactatgagggaacagtcatcctctgggat
ggtttcactgggcagaggtcaaaggtgtaccaggagcatgagaaaaggtgttggagtgtt
gatttcaacctgatggatcccaagcttctggcttctgggtctgatgatgcaaaagtgaag
ttgtggtctaccaaccttgacaactctgtggctagcattgaggccaaagcaaatgtttgc
tgtgtgaaattcagccctacatcaagataccatctagcctttggatgtgcagatcactgt
gtccactattacgacctccgcaacactaagcagcccatcatggtgttcaaaggccacaga
aaagctgtttcctatgccaagtttgttaacggagaggaaattgtgtcagcctccactgac
agccagttgaagctgtggaatgtaaacaaaccccactgtttacgatctttcaaaggccat
atcaatgagaaaaactttgttggcctggcttccaatggggattatgtggcatgtggaagt
gaaaacaactccctgtacttgtactacaaggggctgtcgaagacgttgctgacgttcaag
tttgacactgtgaagagtgtgctggataaagacaagaaagaagatgacaccaacgagttt
gtcagtgctgtgtgctggagggcactcccagatggggaatccaatgtgctgattgcagca
aacagtcaaggcacaataaaggttctggagcttgtgtga
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