Scleropages formosus (Asian bonytongue): 108935683
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Entry
108935683 CDS
T04919
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108935683 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108935683 (skiv2l)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108935683 (skiv2l)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108935683 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
108935683 (skiv2l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
108935683
NCBI-ProteinID:
XP_018610003
LinkDB
All DBs
Position
23:6055399..6070010
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AA seq
1253 aa
AA seq
DB search
MDKTALPSLGPGDLQLSLLEIGCSGRFELLSQRLSDNQPLHPLSTLPHGLPPTGLDLRAE
VETRFLSDPEWLPIHDTDSAFQKFLRVVQRKRQVESLLHCAVSPMHSGLSVVRDPTTGML
LDFNEVLLEDTGLSSKNSLSLLRPPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSEQ
EEEIDFENGLLTVAPGLKAGMDFAAKEPRTSRGEVNLLSLLSNFNDIIDTQLNEEDGEEK
QREGEAPKISRTNSLEDLGIKDSTSAPSQSATSSEGKKEGRVEKEGEPVEEKKRWAIPVD
ISSPCEDFYKRIPDPAFKWPFELDVFQKQAILRLEVHDSVFVAAHTSAGKTVVAEYAIAL
SQKHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLY
NGSEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIG
RIKKRSIYVISTLKRPVPLEYYLYTGNSTKTQKELFLLVDSAGNFLTKGYYAAVEAKKER
TSKHAQSFGAKSSSQNTTASQDRAVWLALLHFLSQQQLTPVVAFTFSRTRCDDNARALSS
MDLTSSVEKSEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIE
MLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEFIQMAGRAGRRG
LDATGTVIILCKAGVHDMGDLHAMMLGKPTVLQSQFRLTYTMILNLLRVEALEVTDMMRR
SFSESHRDTQSQEKRIAQLRKKLASLPPLDTDGQLADLVPFYQTLTELRVTSENLQRAVM
ESVNGLKALSVGRVVVVNNSQHCNALGVILQVSNDSTNRSFTALILCEKGKEEGGAEPQS
SIATLQHLYNPAVFIPDGPCGHTVQKLKLQDISAITTKTLKVIPERIIDNYNKRQQPRFR
LDPPGQAISTATQELLRLAESNPTGIATLDPVNDLQLKGIEVVEASLRMRALQESLREFN
CVHCPTFSEQFAQVQERMSIQEELDTLLFLVSDQSLLLLPEYHQRIRVLESLNYVDCKGA
VQLKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQTVPHITSTLQE
AIDRVLSVAQRIGELQRDCGLAQSAEDFVAQFKFGLTEVVYCWARGMPFSEIAQLTDVQE
GTVVRCIQRLDEVLREVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH
NT seq
3762 nt
NT seq
+upstream
nt +downstream
nt
atggacaagacagcgcttccctccctcggccccggggacctccagctttcactgctggag
ataggctgctcagggaggttcgagctgctctcgcaacgattgtcagacaaccagccttta
catcctcttagcactttgcctcatggcctccccccgactggccttgacctgcgggcggag
gtggaaacgcgcttcttgagtgacccagaatggcttcccatacatgacacagattctgcc
ttccagaagttcctccgagtggttcagaggaagcggcaggtggagtctctgctccactgc
gctgtctccccgatgcactctggcctgtctgtggtacgagacccaaccaccggaatgctc
ctcgacttcaatgaggtgttgctagaggacacaggcttgtcctcaaagaactcactttca
ctcttacggcctcctggacccccctctgagagtctacgtggaagtaataccaactaccct
tttttacccgggggtatggaggagctcaccctggaacagattaagaagaagagtgagcag
gaagaggaaattgattttgaaaacggtttgttaaccgtagccccagggcttaaagccggg
atggacttcgctgccaaagagcccagaacctcaaggggagaagtcaaccttctgtcactc
ctttccaacttcaatgatatcattgacactcagctaaatgaagaggatggcgaggagaag
caaagagaaggggaagcacctaaaatatccaggaccaacagccttgaggaccttgggatc
aaggactctacgtctgccccttcccagtccgctacctcctctgagggcaagaaagaagga
agggtggagaaggagggggaaccagtagaagagaagaagaggtgggccataccagtggac
atcagctctccttgcgaagacttctacaagcgcattcctgacccagccttcaagtggcct
tttgagctggatgtgtttcagaagcaagctatcctccgactagaggtgcatgactccgtg
tttgtggccgcgcatacatctgctggcaagactgtggtagccgagtatgccattgcgctc
tcacagaaacacatgaccaggaccatctacacctcccccattaaggctctgtccaatcag
aagttcagggacttcaagaacacttttggagatgtgggacttttaactggggatgtccag
ctgaaccccgaggcctcttgtttgataatgaccactgaaatattgaggtcaatgctttat
aacggttctgaagtcatacgagacctcgagtgggtcatctttgacgaagtgcactacatt
aatgacgcagagagaggggtcgtctgggaggaggtgttgatcatgctgcccgatcatgtt
agcatcatcctgctgagcgccacagtccccaatgccgtggagttcagcgagtggatcggg
cgcataaagaagcgatcgatctacgtgattagcacattgaaaaggcctgttcccctggaa
tactacctctacactggcaacagcaccaagactcagaaggagctcttcctcttggtggat
tcagctgggaacttcctcaccaaagggtactatgctgctgtggaggccaagaaggagcgc
accagcaaacatgcccagtcctttggggcaaagagctcttctcagaacaccacggcctcc
caggaccgggctgtgtggctggccctcctccacttcctgtcacagcagcagctgacccct
gtggtggccttcactttctcccgcacacgctgtgatgacaacgcccgcgcactctcctct
atggacctcaccagctctgtggagaagagcgagatccactccttcttccagaagagcctc
agccgcctgcgggggggcgatcggcagctgccgcagattcttctgatgagggacctgttg
aagagaggcatagccgtgcatcacagcggcatcctgcccatcctgaaggaggtcattgag
atgctcttttccaggggacttgtaaaggtgctgttcgccaccgagacatttgccatgggt
gtgaacatgccggccaggacagtggtgttcgacagcatccgcaaacacgacggcaccggc
ttcagaaatctgcttcctggagagttcattcagatggcaggcagggcaggcagacggggt
ctcgatgccacgggaaccgtcatcatcctgtgcaaggctggggtgcatgacatgggagat
ctgcatgccatgatgctgggtaagcccacggttctgcagtcccagttccggctcacctac
actatgatcttaaacctgctgcgcgtggaagccctggaggtcaccgacatgatgaggaga
agcttctccgagagccaccgtgacacccagagccaggagaagcggattgcacagctcagg
aagaagctggcttccctccctcccctggacacggacggccagctggcagacctggtgcct
ttttaccaaacattaaccgagctacgagtcaccagtgagaacctgcagagggcggtaatg
gagtccgtcaatggactgaaagccttatccgtgggccgtgtggtggtggtcaacaactcg
cagcattgcaacgccctgggagtcattctgcaggtgtccaacgactccacaaaccgctcc
ttcacagcactcatcctgtgtgaaaagggcaaggaggagggtggggctgagccacagagc
agcattgccaccttgcagcacctctacaaccctgctgtttttataccggacggtccctgt
ggccacactgtgcagaagctgaagctccaagacatctcagccatcaccacaaaaaccctc
aaagtgattcctgagaggattatcgacaattacaataagagacaacaaccacgcttcagg
ctggatccccctggtcaggccatttccacagcaacacaggagcttctgcgtctggcggag
tccaacccaacaggcatcgccacccttgaccctgtgaacgacctccagctgaaggggatc
gaggtggtcgaggcctcgcttaggatgcgagcactgcaggagagcctgcgagagtttaac
tgcgtccactgtccaaccttctctgaacagtttgcccaggtgcaggagagaatgagtatc
caggaggagctggacaccctgctcttcctcgtctcagaccagtcgctcttgctcttgccg
gaataccaccagagaatccgggtgctggagtctctaaattatgtggactgcaagggcgcc
gtccagctgaagggtcgagtggcctgtcagatcagcagccatgagctgttgctcacggag
ctgctgtttgagaacaccctgagtccgctagcccccgaggagagtgctgccctgctgtcc
tgcctggtgttcacccagaacacacagaccgtcccccacatcaccagcaccctgcaggag
gccattgatcgagtgctgtcggtggcccagcgaataggcgagctgcagagggactgtggc
ctggcccagtcggccgaagactttgtggcccagttcaagtttggcctgacagaggtggtg
tactgctgggccagagggatgcccttcagtgagattgcccagctgacagatgtgcaggag
ggcacggtggtgcgctgtatccagcggctggatgaagtgctgcgagaggtgaggcaggct
gcgcgcatcgtgggtgactccgtcctgggaagcaagatggagaaggcctcgctggccatc
cgccgggacatcgtgttcacggcatctctctacactcactga
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integrated database retrieval system
