Scleropages formosus (Asian bonytongue): 108935929
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Entry
108935929 CDS
T04919
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108935929 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108935929 (clp1)
Enzymes [BR:
sfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
108935929 (clp1)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108935929 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
AAA_16
ATP_bind_1
AAA_18
TniB
MMR_HSR1
AAA_22
CbiA
Motif
Other DBs
NCBI-GeneID:
108935929
NCBI-ProteinID:
XP_018610437
UniProt:
A0A0P7VE50
LinkDB
All DBs
Position
5:18298543..18302740
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AA seq
450 aa
AA seq
DB search
MAGEGPEKSSEEGTASAGGASGGGVRFELEKETELRFEVEAGEKVQLELLSGLAEVFGSE
LTRNKKYTFGSGSKIAVFTWHSCSVSLTGKTEVAYVSRDTPMLLYLNTHAALEQMRQQAE
RDNERGPRVMVVGPTDVGKSTVCRLLLNYAVRLGRRPTLVELDVGQSGVSVPGTVSALCI
ERPADVEEGFSVQAPLVYHFGSTSPGTNIKLYNKLTSCLAEVFSQRCEVNRKASVGGCVI
NTCGWVKGSGYQALVHCASAFEVDVVLVLDQERLYNELKRDLPHFVKVVLLPKSGGVVER
NKDCRREARDEKIREYFYGFRGVSFYPHAFDVRFSDVRIYKIGAPSIPDSCLPLGMSQDD
TQLKLVPVTPGRDLTHHVLSVSCAEDEGAEAGASGPAAQRRGILESPVCGFIVVTAVDTQ
AQVMTVLSPAPRPLPRHTLLIMDIRFIDLK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagaaggtcctgagaagtcgagtgaggaaggaactgcatctgctgggggtgca
tccggagggggtgtgcgcttcgagctggagaaagagacagagctgcggttcgaggttgaa
gctggcgagaaggttcagctggagctactgtctggactggcagaggtctttggctcagag
ctaacacggaacaagaagtacacctttggatctgggtccaaaattgctgtgtttacctgg
cacagctgcagcgtgtcactgactgggaaaaccgaggtggcttatgtgtcccgagacacc
cccatgctgctctacttaaatactcatgcagctttggagcagatgagacaacaggctgaa
agggataatgaaagaggacccagggtaatggtggtgggcccaactgatgtaggaaaatca
actgtgtgtcgcctgcttctgaactacgctgtgcggctgggcaggcgccccacactggtg
gagctggacgtggggcagagcggagtgtcagtccctggcacggtgtcagctctgtgcatc
gagagaccggctgatgtggaggagggcttctctgtccaagccccactggtgtaccacttt
ggttctacctcacctggcactaacatcaagctttataataagctgacctcctgcctggct
gaggtgttttcgcagcgctgtgaggtgaaccggaaggccagcgtgggcggctgtgtcatc
aacacctgcggctgggtgaaaggctctggctaccaggcactggtgcactgcgcctccgca
ttcgaggtggatgtggttctggttctggaccaggagcggctctataatgagctgaagcgt
gatttgccgcactttgttaaggtagtcctgctacccaagtccggcggtgtggtcgagcgc
aacaaggactgtcgcagggaggcgcgcgatgagaagatccgggaatacttctacggcttc
cggggtgtttccttctatccccatgcttttgacgtgcgcttctcggatgttcgcatctac
aagatcggcgctccctccatcccagactcctgtctaccactgggaatgtctcaggatgac
acgcaactgaagctggtgccagtgactccagggagggatcttacccatcatgtcctcagc
gtgagctgcgctgaggacgagggggctgaggctggtgccagcgggcctgcagcccagaga
agagggatactggaaagccccgtgtgtggcttcattgtagtgactgccgttgacactcag
gcccaggtgatgactgttctgtctcctgccccacgccctctgcctcgacacaccctgctc
atcatggacatccgctttattgatctcaagtag
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