Scleropages formosus (Asian bonytongue): 108937331
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Entry
108937331 CDS
T04919
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
sfm04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108937331
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108937331
09142 Cell motility
04820 Cytoskeleton in muscle cells
108937331
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sfm04147
]
108937331
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108937331
Exosome [BR:
sfm04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108937331
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108937331
Hyaluronan
Extracellular matrix or blood plasma proteins
108937331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_3
Kunitz_BPTI
Sec23_trunk
Motif
Other DBs
NCBI-GeneID:
108937331
NCBI-ProteinID:
XP_029109974
LinkDB
All DBs
Position
8:19903045..19926827
Genome browser
AA seq
2199 aa
AA seq
DB search
MLQIPQSQLHSEVELHQRSTSPASGVKQSPAWGFLGCGKKAKFDLMFFVHYSKGKLQHFK
DFIKNVVSDFNFEEFNMKIGLAFIPPQKGGFNLDNISREEILRKIESVEPRATDAPSETP
LPVFLRRADQYFRNSSGGRPGESVPQIAVFLTDYIGNQTYKNSAINLHLAGITVYTVYVG
TEDSSQLFYVASYPSEETSLQVRSYQDLSSLPQTLKGRICYNLTHKDEDYWKLRKLVEKS
CSKHMKADIYFLIDGSESVSDEEFNKIKVFVNDTVQFFPVRPQGVRFGVVQYANETKSEI
VLGEYSNRRDLRCHIHYTTRMTGNTDIGKGLRDTYTRLKSMKRPNTPQYLVVLMDYTKDG
NHDEKQGVPTAVMADLQEQNVIVYAISDDMDFLDEMTADPEAQKHLSSFAFLKNIELQLA
QNICKSAALQSTEADVILLLASSGISSYTYDQMKRFLKAFVDSIDPEKSRVRVGVVQYSN
TVREEFSLATKLDRKAYHQAIDNMREMQGSTLTGKALRSVLKLFRTAAGNQEKVLVVIAD
EPSQDSLSQPIVDLRGSGIDIYAVRTSDTDHSQLKDITGTDKKIFYVHNNFSDVANALKD
KIQLECLNQDIADIVFVVDVSSGIGSEEFKTMKNFMISVVNNFDIGDDNVRVGVTLFGEN
VLEAFGLSSYGDIRSLEAAIRNLNPSGIRRNSRSTSKAIEFSKGLLSDSRGGRQRSSIPQ
FLITIVHKDTSDRNRLPAVCDNVRASGIHTLAVGIVYQNVEDLGIIGGSDSRYFSVNAFQ
NLKHVSRRVTQAICSVPYCNTTLVDVVFLIDGSESISEENFEREKNFVKSVVQHLSAYES
VRVGLAQFSSDCVVYFKLRSFYPRSEFYDAIGGIEQEYAGTKLLNALVVSRSFFTPDQKR
DSVVPRLIVMTDGIDKRDPQAAIAQAAKDLRDEDGVDVLVVAVGDEINALTLNRIAGDPS
NVIRVASHADLGEIVPRVVRAVCDSPQCNVTPSPPPPLLHECLLDIAVGVDVGGMPGELL
MLYHHQLSENFLPALREIAALRMTGCGSNISVRFGFHVANTEPPYETPFEALSDDVVQRL
QRSVIGHSAPLDGQYLLSFLEMFRKYSNSTHVQAILIFTDGLDASMTELKAASDSLRQNG
VQGLITVALEGTSQEAIQQLHTIEFGPFGTEACCKAQLLIGNTAAGELHSAFITFSEELC
CRCCVCVGPPGPKGRPGTRGMAGDKGQKGALGHTGDDGPVGSPGHPGEDGIPGYKGCDGP
RGQKGNRGFLGDKGENGADGWDGVQGWQGDDGTHGPKGLKGDPGNQGERGPQGPQGEIGK
KGFPGDPGPPGLDNINEGEKGDRGFPGPEGDPGPIGSDGENGDPGSKGRSGRRGHPGFQG
SKGNDGAGGLPGEIGPRGIQGPRGLAGEKGNPGEPGHKGPQGSHGDPGIQGIGGSPGRRG
VKGQPGNTGDKGQNGEQGFRGPPGSDGYEAYGLPGPKGIKGAVGNSGPAGIQGEPGEKGP
DGDRGPKGIRGALGLMGPKGADGEPGDPGYKGRRGPKGARGSQEHSDCDLLDLVRKNCAC
QGCRECPLYPLDLVIAYDMSDEVLNFQLNIMKDLIVKIVNETHISESTCPTGARVAVVSF
SGSAKRIIGFTDYHTKKKLLQLVEHKVVYERGGGPRNLGEAMRYTTRHVFKRTRGGKNMK
KMAIFLTRMSMGRGDFATISALEENDVLLTAAMEMHANLITPVIVTTIPPDPELLNAFSH
FPGPHEIISDFTNVDQILARLTTCFLCYDPCHPDQRCASTLPSPVHLDADVLFLLDSSRD
VSKAEYEQARLFLYGMVDRFGTRGSSSAPITGARLALVQQGAHIGRGGDPVHVEFDFQYR
GTKEDMKEYIKRSMHQLRGTSAWGPALEYVMGSLFAKQSRPGSKKVIFNLLAGASDPQEQ
GLLKKVALKAKCSGYILFTLALGPEVSDSEIDALSCPPVSTHSCQLDKPGASDAEYAIRF
AETFFRLLIKTPLGNQCASPPGGCEWVQAEESRISIQLDSLRVQGAADLKHLRDEAVIPV
RTKLESPVEKIQLSLLDTYQSDSPLRASSVKAQLAHPQDYAHRSGFDGVENITLKRTAAE
TLDSVQEKPEKYEKPRAGGHFSQSISADVKGKLLSGTLVRCLQSKDYGRVCSESQGVRWY
FNKQTKHCAVFWYRGCGGNGNRFGSQAACRQHCATQGAP
NT seq
6600 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaaattccccagtcccagttacactcagaggtggagttgcaccaacgctccact
tctcctgcatcgggggtcaagcagtctccagcctggggtttcctcggttgtggcaaaaag
gcaaaatttgatctcatgttcttcgtccattattcaaaaggaaaattacaacattttaaa
gatttcattaaaaatgttgtcagcgattttaattttgaggaattcaacatgaaaattggg
cttgcattcatacccccacagaaaggtggtttcaacctcgacaatatcagcagggaagag
attctgaggaaaatagagtcagtggagcccagagcaactgacgcacccagcgagacccct
ttgccggtcttccttcggagagcagatcagtactttagaaacagcagtggaggaaggcca
ggcgagagcgtgccccagattgcggtcttccttactgattatattggaaatcaaacgtat
aagaactctgccataaaccttcatcttgctggcatcacggtgtacacggtgtatgtcgga
acagaagactcatcacaactgttttacgtagcctcttacccaagtgaagagacgtctctg
caagtccgctcctaccaggatctcagttcactcccacaaaccctaaagggcagaatatgc
tacaatctcactcacaaagacgaggactactggaagctgagaaaactggtagaaaaaagc
tgttctaagcacatgaaagcagacatctacttcctgattgatggctctgagagtgtttca
gatgaagaatttaataaaataaaagtatttgtgaatgacacagtacagtttttcccagtg
agaccccagggtgtccgctttggagttgtgcagtatgcaaatgaaactaaatctgaaatc
gttttaggagagtacagcaatagacgtgacttaagatgtcatattcactacactacaagg
atgacaggtaacaccgatattggcaaaggtctcagagacacttatactagacttaaatcc
atgaagaggccaaacacaccccaatatcttgtggtattgatggattacacaaaggatggc
aaccacgatgagaaacagggtgtgccgacagcggtcatggccgacctgcaggaacagaat
gtcattgtatacgccatctcggatgacatggacttcttggatgaaatgacagctgaccct
gaagcacagaaacatttgagcagctttgcatttctaaagaatattgagcttcaactggct
caaaacatttgcaaatcagcagctttacaaagcactgaagctgatgtcatcctcttactg
gccagctcgggcatctcctcttacacatatgaccagatgaagagatttttgaaggccttc
gttgacagcattgatccagagaaaagccgcgttcgcgttggtgtggtgcagtatagcaac
acagtgcgtgaggagttcagtttggcgacaaagctagacagaaaggcctatcaccaggcg
atcgataacatgagggagatgcaaggcagtactcttacaggaaaggctttgcgctctgtt
ctcaagctttttcgcactgcagcgggcaaccaagagaaggtccttgtggtgatcgcggac
gagccatcccaggactccttgtctcagcccattgtagacctgcgtggttccgggattgac
atttatgctgttaggacatcagacacggaccacagccagctgaaagacataactggaacg
gataaaaaaatcttttacgtgcacaataatttttccgatgtagcgaatgctttgaaggac
aaaattcagctggagtgcttgaaccaagatatcgctgacatcgtatttgtggtggatgtg
tcaagcggcattgggagtgaggagttcaagacaatgaaaaactttatgatttcggtggtg
aacaactttgacatcggggatgacaatgtgcgcgtcggggtcaccttgttcggggagaat
gtgctagaagcttttggtttgtcttcatacggagatattcgttcactggaggcagctata
agaaacctgaacccaagcggaattcgtcgtaattcaaggagcacaagtaaagcaatcgag
ttttccaaaggcctgctttcagactcccgagggggtcgccagcgaagcagtatcccccag
ttcctcatcacaatcgtccacaaagacacctccgaccgaaacaggctgccagctgtgtgc
gacaacgtccgcgcttccggaatccacaccctggccgttggaatagtttaccaaaacgtg
gaggacctcggaatcatcggagggtcggacagcagatatttctctgtaaatgcatttcaa
aacctcaaacatgtgtcgaggagagtcactcaagcaatctgcagcgtgccatactgcaac
acgactctcgtggacgtcgtcttcctcatcgacggctccgaaagcatatctgaggaaaat
ttcgagcgggagaaaaattttgttaaaagcgtcgtgcagcacttaagcgcttacgagagc
gtgcgggtcgggttagctcagttcagctccgactgcgtcgtctatttcaaactgcgctcc
ttttacccccggtcagagttctacgacgcgatcggcggaatcgagcaggaatacgctggt
acgaagctactgaacgcgctcgtggtttcgaggagcttctttactccagatcagaaacga
gactcggtcgttccgcgcctcatcgtgatgaccgacggcatcgacaaacgggacccccag
gccgcgatcgcacaggcagcgaaggacctgcgcgatgaggacggagtggacgttttggtc
gtggcagtgggcgacgaaatcaacgcgctcactttgaatcgcattgccggagatccgtcc
aacgtgatcagagtggcatcgcatgcggacctcggagaaattgtgccgagggtggtgcga
gcggtgtgcgacagcccccagtgcaatgtaacaccatcgccccctcctccattgctccat
gagtgcctgctggacatcgctgtgggtgtagatgttggagggatgccaggcgagcttttg
atgctctaccaccaccagctgagtgaaaacttcctgccagctcttcgggagattgccgct
ctcaggatgaccggctgcgggtcaaacatttccgtgcgcttcggtttccacgtggccaat
acagagcctccttatgagactccgttcgaggccttgagcgacgatgttgtgcaaagactg
cagaggagcgtgatagggcactctgcacctctagatggacaatacctgctgtcgtttctg
gagatgtttaggaagtactctaacagcactcacgtgcaggccatactgatcttcacagat
gggctcgatgccagcatgactgaactgaaggctgcatctgattctcttagacagaacgga
gtgcagggtctcatcactgtggctctggaggggacgtcccaggaagccatacagcagctg
cacaccattgaatttggtccgtttgggacggaggcatgttgcaaggcccagctgcttatc
gggaatacagctgctggtgaattacattctgcgtttatcaccttctcagaagaactgtgc
tgcaggtgttgcgtatgtgtcggcccacctggacccaaagggagacctggaacacgtggc
atggcgggagacaaaggacagaaaggagcccttggacacacaggagatgatggcccagtg
ggcagcccaggacatcctggagaggatggcataccaggctataagggatgtgatggaccc
agaggtcaaaagggtaacagaggtttcttgggagataagggtgagaatggagctgatgga
tgggatggtgtacaaggttggcagggagatgatggaacccatggcccgaagggactgaaa
ggtgatcctggcaatcagggagaaagaggacctcaaggcccacagggggagattggaaaa
aagggatttccaggagacccaggcccacctgggttggacaacattaatgagggagaaaag
ggggacagaggcttccctggacctgagggtgatcctggaccaattgggtcagatggagaa
aatggtgacccaggaagtaaaggaaggagtggccgaagaggacaccctggatttcagggt
tctaaaggaaatgatggtgcaggtggtttgccaggcgagattggaccgagaggcatacag
ggccctcgtggattagctggtgaaaaggggaaccccggagagcctggtcacaaaggtcca
cagggctctcacggagatccaggcatccagggaatcgggggcagtccaggaagacgaggt
gtaaagggtcagcctggaaatacaggtgacaaaggacaaaatggagaacaaggatttagg
ggacccccaggtagcgacggttatgaagcttatggactcccagggccaaaaggaataaaa
ggtgccgtgggcaacagtggtccagcgggaattcagggtgagcctggggaaaaaggacct
gacggagacaggggacccaagggcattcgtggggcactgggtctaatgggaccaaagggt
gcagatggagagcctggtgacccgggttataaagggcgcaggggtccaaaaggtgcacgg
ggaagccaggagcacagcgactgtgatcttttggatttagtacgcaagaactgcgcatgc
cagggctgccgtgagtgtccgctatatccactggacttagtgatcgcctatgacatgtca
gacgaagtgctgaatttccagctcaacatcatgaaggaccttattgtgaaaatcgtgaat
gaaacgcacatcagcgagagcacttgtccgacgggggctcgcgtggcagttgtgtccttc
tccggcagcgcaaagaggatcataggcttcactgactatcacacaaagaagaagctgctg
cagctagtggagcacaaagttgtgtacgagaggggtggcggccctcgcaacttgggcgaa
gccatgaggtataccacaaggcacgtgttcaaaaggaccagaggcggaaagaacatgaaa
aagatggccatcttcctgacaagaatgtctatgggaagaggagactttgcaacaatctct
gctctggaagaaaatgacgtgttgttgacagcagcaatggagatgcatgccaatctcatt
actcctgtcatcgttaccacaatcccacctgatcccgagctcttgaatgctttctcacac
tttcccgggccacatgaaatcataagtgacttcaccaatgtagaccagatattggcaaga
ctgacaacatgtttcttgtgttatgatccctgccatccagaccaaaggtgtgcctcaaca
ctgccttcccctgtgcacctggacgctgatgtcctcttcctcctggacagctctcgggat
gtcagcaaggccgagtacgaacaagcgcgcctcttcctctatggcatggtggatcggttt
ggaacccgcggcagctcttcagcgcccataactggagcgagactcgcccttgtccagcaa
ggggcccacataggcaggggaggggatcctgtgcacgtggagtttgacttccagtacaga
ggcacaaaggaggacatgaaagagtacatcaagcggtctatgcaccagctccgaggaacc
tccgcctggggcccagctctggagtatgtcatgggaagcctgtttgctaagcagtccagg
cctggaagcaaaaaggtcattttcaacctcctggctggtgccagtgacccccaggagcag
ggattgctgaaaaaggtggcactgaaggccaaatgcagtggatacatcctcttcactttg
gccttaggaccagaggtgtcggacagcgagattgatgccctttcatgccccccagtcagc
actcactcctgtcagcttgacaagccaggtgcttctgatgcagagtacgccatacgcttc
gcagagaccttcttcaggctactgataaagacgcctcttggcaatcaatgtgcgagtcct
cctggtggctgcgaatgggttcaagctgaggaatcaaggatcagcatccagttggacagt
cttcgtgtgcagggcgcagcagatctgaaacatctcagagatgaagcagtcatccctgtc
cgaacaaagctcgagtctcctgtggagaaaattcagctgtccttgctggacacttatcag
tcggacagccctctcagagcgagctcagttaaggctcagttagctcatcctcaagactat
gctcatcgatctggctttgatggtgtagagaacattaccctaaaaagaactgctgccgaa
acgctcgacagtgtccaggagaaaccagaaaaatatgagaagccgagagctggtgggcat
ttctcacagagtatttcagctgacgtcaagggtaaactgctctcaggaactttagtgcgc
tgcctgcagagcaaggactacggtagagtatgcagcgagtcccagggtgttcgctggtac
ttcaacaagcagacaaagcactgtgccgtattctggtaccgtggatgtggtggcaacggg
aaccggtttggaagccaggcagcctgccggcaacactgcgcaactcagggggccccctga
DBGET
integrated database retrieval system
