Scleropages formosus (Asian bonytongue): 108937357
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Entry
108937357 CDS
T04919
Symbol
lsm2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03018
RNA degradation
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108937357 (lsm2)
09123 Folding, sorting and degradation
03018 RNA degradation
108937357 (lsm2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108937357 (lsm2)
03041 Spliceosome [BR:
sfm03041
]
108937357 (lsm2)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108937357 (lsm2)
mRNA degradation factors
5'-3' decay
Lsm complex
108937357 (lsm2)
Spliceosome [BR:
sfm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
108937357 (lsm2)
Complex C
U2 snRNP components
108937357 (lsm2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
DYW_deaminase
Motif
Other DBs
NCBI-GeneID:
108937357
NCBI-ProteinID:
XP_018612753
UniProt:
A0A0P7Z647
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Position
8:complement(25712572..25718022)
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AA seq
95 aa
AA seq
DB search
MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC
FIRGSVVRYVQLPADEVDTQLLQDAARKEAMQQKQ
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttactccttcttcaagtccttggtggggaaagacgtggtcgtggagctaaaa
aatgacctgagcatctgtgggacgctccattcagttgatcagtacctgaatatcaaactt
acagacataagcgtgacagatcctgaaaagtatccacacatgttgtctgtgaagaactgc
ttcatccgtgggtcggtggtgcggtacgtccaacttcctgctgatgaggtggatacacag
ctgctgcaagatgctgcgcgcaaggaggccatgcagcagaagcaatga
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