Scleropages formosus (Asian bonytongue): 108937427
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Entry
108937427 CDS
T04919
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108937427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108937427
03009 Ribosome biogenesis [BR:
sfm03009
]
108937427
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108937427
Spliceosome [BR:
sfm03041
]
Complex A
U1 snRNP components
U1 related factors
108937427
Complex B
108937427
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
Pre-60S particles
Helicases
108937427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
Asp
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108937427
NCBI-ProteinID:
XP_018612901
UniProt:
A0A8C9R6W9
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All DBs
Position
8:complement(26619251..26625003)
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AA seq
628 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGSRGSSGSSGKYGNPGERLRKKHWNLDELPKFEKNFY
QEHPDVTRRPAQEVDQYRRSKEITVKGRDCPNPVLKFHEASFPTYVMDVITKQNFSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTREL
AQQVQQVAAEYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
RRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQ
INVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFVETKRRCDDLTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPGNMRQASDLVSVLREANQAINPKLLQMAEDRG
GRSRGGRGGGYRDDRRDRYSGGRRDFGSFRDRDNDRGYDSGPKKAFGTSTQNGGYGTSNY
DNSSSSSASTTSFTSGYGNNGQSGFSATNQAVAFGGQNFQNQQYGAAQGVAAAAQNGIAH
PQFPFNPQQAQQPPQPMVPYPMPPPFPQ
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggttttccgaccgagatcgtgggagagacagaggatatggcagcggccctcct
cgctttggcggaagccgcggaagcagcggctcctccgggaagtacggcaatcctggggaa
agactccgtaagaagcactggaacctggacgagctcccaaagttcgagaagaacttctac
caagagcaccccgacgttacaagaagaccggctcaagaagttgatcagtacaggaggagt
aaagaaatcacagtgaaagggagagattgcccaaaccctgtactgaagttccatgaggcc
agttttccgacgtatgtgatggatgtgatcaccaagcagaatttctcagaacctacaccc
atccaagctcaagggtggccgctggctttgagtggcaaggacatggtgggaattgcccag
acaggttctggtaaaacgctctcgtacctgctgcctgccattgttcacatcaaccaccag
cctttcctggaacgcggtgatggccccatttgtctggtactggcaccaactcgtgagttg
gctcagcaggtccagcaggttgcagccgagtacggaaaggcctcccggctgaaatctact
tgcatctatggtggtgctcccaaaggaccccaaattcgtgacctcgaacgaggagttgag
atttgcatcgcaactcccggaaggctcattgacttcctcgaagctggaaagactaatctt
cgacgatgcacttacctggtcctggatgaggctgaccggatgctggacatgggctttgag
ccacagatacgaaaaattgtggaccaaatccgacctgacaggcagacgctgatgtggagt
gccacctggccaaaggaggtgcgtcagctggctgaggacttcctgaaggactatgtacag
atcaacgtgggtgccctgcagctgagtgccaaccacaatatcttgcagattgtggatgta
tgcaatgatggagagaaggatgacaagcttcttcgcctgctggaagaaatcatgagtgag
aaggagaacaagaccataatctttgtggagacgaagcgccgctgtgatgacctcacaagg
cgaatgagaagagatggatggccagcaatggggattcatggtgataagagtcaacaggaa
agggactgggttcttaatgagttcaaatatgggaaggcccccatccttattgccacagat
gttgcctccaggggtctagatgtggaagatgtcaagtttgtcatcaactatgactaccct
aactcctcggaggactacatccatcgcatcgggaggacggcccgcagccagaaaaccggg
acagcctacaccttcttcacccctggcaacatgaggcaggccagcgacctagtctctgtg
ctccgtgaggccaaccaggccatcaaccccaagctcctccagatggcagaagacagagga
ggtcgttcaagggggggaagaggtggcggttatagagacgatcgtcgcgacagatactct
ggaggcagaagagatttcggcagcttcagggacagagacaacgacaggggatatgacagc
ggaccaaagaaggcctttggcacaagcacccagaacggaggttacgggaccagcaactat
gacaacagcagcagcagttcagcctctaccaccagctttaccagtggctacggcaacaat
ggacaatctggcttcagtgccacaaaccaggccgttgcgtttgggggtcaaaacttccag
aaccagcagtatggtgcagcccagggggtggcagcagctgcccagaatggcatagctcac
ccgcagtttccttttaatcctcagcaggcacagcagccaccccagcccatggtaccctac
cccatgcctccacccttccctcagtaa
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