Scleropages formosus (Asian bonytongue): 108937480
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Entry
108937480 CDS
T04919
Symbol
vps4b
Name
(RefSeq) vacuolar protein sorting-associated protein 4B isoform X1
KO
K12196
vacuolar protein-sorting-associated protein 4
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03250
Viral life cycle - HIV-1
sfm03272
Virion - Hepatitis viruses
sfm04144
Endocytosis
sfm04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108937480 (vps4b)
03272 Virion - Hepatitis viruses
108937480 (vps4b)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108937480 (vps4b)
09143 Cell growth and death
04217 Necroptosis
108937480 (vps4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfm04131
]
108937480 (vps4b)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108937480 (vps4b)
Membrane trafficking [BR:
sfm04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-III complex
108937480 (vps4b)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
Check point factors
Other check point factors
108937480 (vps4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIT
AAA
Vps4_C
AAA_lid_3
AAA_16
AAA_5
TIP49
AAA_14
AAA_22
RuvB_N
TPR_12
TPR_1
IstB_IS21
AAA_18
DUF815
AAA_2
NPHP3_N
nSTAND3
RNA_helicase
AAA_33
TPR_11
USP8_dimer
PhoH
AAA_24
AAA_17
Csx12
Mg_chelatase
TEBP_OB2-like
TPR_2
nSTAND_NTPase5
AAA_7
Parvo_NS1
TPR_8
Sigma54_activat
AAA_28
NACHT
bpMoxR
ABC_tran
SpoIISA_toxin
Viral_helicase1
CLEC16A_C
INTS5_C
Motif
Other DBs
NCBI-GeneID:
108937480
NCBI-ProteinID:
XP_018612980
UniProt:
A0A8C9RFT4
LinkDB
All DBs
Position
7:complement(11415781..11427650)
Genome browser
AA seq
508 aa
AA seq
DB search
MEPTNLQKAISIANKASEADQTGNYEEAILLYQKAVQFFLHILKREPQGKDGNQKIRNKC
KEYLDRVEELKKYIEEKEKAIDLASKAAQEDKAQNYEEALRLYQHAVQYFLHVVKYEAQG
EKSKQSIRAKCAEYLDRAEKLKEYLKKKEKAPPAKPVKESQADDKGTESDEGEDPEKKKF
QNQLSGAIVMEKPNIKWNDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPP
GTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKSLFSMAREHKPSIIFIDEI
DSLCGSRSENESEAARRIKTEFLVQMQGVGNDNDGILVLGATNIPWTLDSAIRRRFEKRI
YIPLPEDHARTLMFKLNLGSTPNSLTEADFVSLGKKTEGYSGADISIIVRDALMQPVRKV
QSATHFKQVRGPSRQDPNDLVDDLLTPCSPGDPNAIEMTWMEVPGEKLLEPIVSMRDMEK
SLSNTKPTVNEQDLEKLKKFTEDFGQEG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atggagcctacgaacctgcagaaagctatcagtatagccaataaggcttcagaggcagac
cagactggaaattatgaagaagctattcttttgtaccagaaggccgttcagttctttctg
cacatattgaaacgtgaaccacaggggaaagatggaaaccagaagatcagaaacaaatgc
aaagagtacctggaccgagtggaggagttaaagaaatacattgaggagaaagagaaagct
atagacctggccagtaaggctgcacaagaagacaaagcacagaactatgaagaagctctc
cgtttatatcaacatgccgtgcagtacttccttcatgttgtcaaatatgaagcccagggt
gagaaaagtaagcagagcatcagggcaaagtgtgcagagtacctggacagagcggagaag
ctgaaggaatatctaaagaagaaggagaaagctccccctgccaagccagtgaaggagtcc
caggctgatgacaaaggaactgagagtgatgaaggagaggatcctgagaagaagaaattc
cagaatcagctttcaggagccattgtgatggaaaagcctaacatcaagtggaatgatgtg
gctgggctagagggggcgaaggaggctctgaaggaagccgtcatcctgcccatcaagttc
ccacaccttttcacagggaagagaaccccgtggaggggaatcctactctttgggccccca
ggaacagggaagtcttacctggcaaaggctgtagccacagaggccaacaactccaccttc
ttctccatttcctcctcggacctggtgtccaagtggctgggagaaagtgaaaagctggtg
aaaagtctgttctctatggcccgggagcacaaaccctccatcatcttcattgacgagatt
gattcactgtgtggatcgcgaagcgagaatgaaagcgaggcggcccgacgcatcaagaca
gagtttctggtccagatgcaaggtgttgggaatgacaacgatggaatcctggttttgggt
gccacaaacattccctggactctggactctgctatccggagacggtttgagaagcgcatc
tacattccgctgcccgaggaccatgcccgcaccctcatgttcaagctgaacctgggctcc
accccaaacagcctgacggaagcagattttgtctccttggggaaaaagacagagggctac
tctggtgctgacataagcatcattgtgagggacgccctcatgcagccggtccggaaagtg
cagtcagctactcacttcaaacaggttcgaggaccatcaaggcaagaccccaatgacctg
gtagatgaccttctgactccatgttctccaggggatccaaatgccatagaaatgacttgg
atggaagtcccaggagaaaagcttttggagccaattgtcagcatgcgggacatggagaag
tctctctccaacactaaaccaacagttaatgaacaggatctggaaaaactgaagaaattc
acagaggactttggacaggaaggctga
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