Scleropages formosus (Asian bonytongue): 108938174
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Entry
108938174 CDS
T04919
Symbol
sox13
Name
(RefSeq) transcription factor SOX-13 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfm03000
]
108938174 (sox13)
Transcription factors [BR:
sfm03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
108938174 (sox13)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
108938174
NCBI-ProteinID:
XP_018614047
UniProt:
A0A8C9V9Z4
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Position
2:complement(4224068..4251624)
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AA seq
706 aa
AA seq
DB search
MSSGLRERREPLVCARSDAGSETFVTACASRELSCLPGWVSSRGRARARGQTAARTNTVK
KCGKRRREKKRTLPPGARFSPERMCEPIPPVSHLPAKEDVTMVGIKLEEEGPGVVRESVG
GEAQRASPCEWTADPQSERADVHMGTPLSTRSPLASTGTMMKAQWPSPAVSPEQDASPSK
EGTREDSPQDQDGSSRRYKRPELQHNVSEVMPTIEKLLNTDWREKLLGKGSPGSTSLKGT
PESLAEKELQLLVMINQLSSLREQLLGAHSEQRNMAALLLEKQQQQMELARQQQEQIAKQ
QQQLIQQQHKINLLQQQIQQVNMPYVMIPAFHPNSQPLSVTAEPQLGLPLQPIPCKPVEY
PMQLLPNSHSTSTKKSSGGVHRQEPSQPLNLTSKPKGLDMGKVPSPQSLELSSLHLQSSY
RARDLQHSPPRPGLSLGFLGEGDMVTQAIHDAQQLLRSNGPPGREGDCATRKETSPGVRL
SHGTRGEDGQDHHSSDSEGTMPATGVAGFAETHQSSSGHIKRPMNAFMVWAKDERRRILQ
AFPDMHNSSISKILGSRWKSMSNQEKQPYYEEQARLSRQHLERYPDYKYKPRPKRTCIVE
GRRLRVGEYKAMMKSRRQEQRGTYSASQPDPALHYSSSDPHYPRPSMSMTMHPTMMEHYR
PGVLEPQQGRAMEAHGGPVEKRHRYSEGEESDAGERSEGELVVLTD
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgagctccggtctccgagagcgcagggaaccgctcgtgtgcgcgcggagcgatgcgggc
agtgagacttttgtgacagcctgtgcgtcgcgcgagctttcctgcctgcctgggtgggtc
agcagtcggggacgagcacgcgcgaggggtcagacggccgcaagaacaaacacagtaaaa
aagtgcggtaagcgccgtcgggagaagaagaggaccttgccgcccggagcacgtttctcc
ccggagcggatgtgtgagcccatccccccagtgtcacatctcccagccaaagaagatgtg
actatggtcggcatcaagctggaagaggagggcccaggggtggtgcgcgagtcagtgggt
ggagaagctcagcgagcctcaccctgtgaatggactgccgatccacagtcagagcgtgca
gatgtccatatggggacacccctcagcacacgttcaccattggcctctacagggaccatg
atgaaagcacagtggccctcaccggctgtgtctcctgaacaggatgcttcccccagtaag
gaggggacccgtgaagacagcccccaggaccaggatgggtccagtcggagatacaaaaga
ccagaacttcaacacaacgttagtgaagtgatgccaaccattgaaaagctgctcaacaca
gactggagagaaaagcttctgggcaaaggatccccaggaagtaccagtctgaaaggcaca
ccagaaagcctggcagagaaggagctccagctgctcgtgatgatcaaccagctttctagc
cttcgggagcagctgctgggtgctcactctgagcaaaggaacatggctgccctgctgttg
gagaagcaacagcaacagatggagctggcccggcaacaacaggagcagattgcaaagcaa
cagcagcagctgattcaacagcagcataagattaatcttctacagcagcagattcagcag
gtgaacatgccatatgtgatgatccctgctttccatcccaactctcagccactgtctgtc
actgcagagcctcagctaggccttcctctccaacccatcccctgtaagccagtggaatat
cccatgcagctcctccctaattcccactccacctcaacaaaaaagtccagtgggggagtc
cacagacaggaacccagtcagccactcaatctgacctccaaacccaaaggactggacatg
ggtaaggtgcccagcccccagtcactggagctgtcttccttgcacctacagagcagctac
agggcccgcgacctacaacatagtccacctcgaccaggactcagcctggggttcctgggg
gagggggacatggtgacccaggccattcatgatgcccagcagctgctgaggagcaacggg
ccaccgggaagggaaggggactgcgctacaaggaaggagacgtctccaggtgttcgactg
agtcatggaacaagaggcgaagatggtcaggaccatcacagcagtgactcagaggggacc
atgccagctactggcgttgcaggtttcgctgagacacaccagtcctcatcggggcacatc
aagaggcccatgaatgccttcatggtgtgggccaaggatgagcgccggcgcattctgcag
gccttcccagatatgcacaactccagcattagcaagatcctgggctcgcgatggaagtcc
atgtccaatcaggagaagcagccatactatgaggagcaggcccggctgagccgccagcat
ttggagcgctacccagactataagtacaaaccacgaccaaagcgcacttgcattgtggag
ggacgtcggctgcgtgtgggagagtacaaggccatgatgaagagtcgacgccaggagcag
cgtggaacctactcagccagccagcctgatccagccttgcactactcctccagtgatccc
cattaccccagacccagcatgtctatgaccatgcaccccaccatgatggagcactacagg
cctggggtgctggagccccagcaggggcgggccatggaggcccatggaggtcctgtggag
aagaggcaccgttatagcgagggggaagagagtgatgctggggagcgaagtgagggagaa
cttgtggtcttgaccgactga
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