Scleropages formosus (Asian bonytongue): 108938562
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Entry
108938562 CDS
T04919
Symbol
rxra
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
KO
K08524
retinoid X receptor alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03320
PPAR signaling pathway
sfm04148
Efferocytosis
sfm04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108938562 (rxra)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
108938562 (rxra)
03320 PPAR signaling pathway
108938562 (rxra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfm03000
]
108938562 (rxra)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
sfm03310
]
108938562 (rxra)
Transcription factors [BR:
sfm03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
108938562 (rxra)
Nuclear receptors [BR:
sfm03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
108938562 (rxra)
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
108938562
NCBI-ProteinID:
XP_018614702
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Position
17:complement(10630482..10726421)
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AA seq
542 aa
AA seq
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METKPFLSLGNSPTSRSSRWKPSSREELPDWSTLLLPRSHSRGFLKPQCSLPPPSQHGRS
MESESSPTACSCFTGMCPLHQRRISTDSSSQLSPSSLGSPTAHPLHPSLLSPTSMGSSGQ
LHSPICTLNSPINGLGSPFSVISSPMGHHSMPAPPTSAMGFGPSISPQLNSPMNPVSSSE
DIKPPLGLNGVMKVPAQPSGTSLSHTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRK
DLTYTCRDNKDCTIDKRQRNRCQYCRYQKCLAMGMKREVLLNTAVQEERQRAKDRNENEV
ESTSSANEDMPVEKILEAELAVEPKTETYIEGNLSVPSNSPNDPVTNICQAADKQLFTLV
EWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSA
GVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNPDSKGLSNPGEVEALREKVYASL
EAYCKHKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQ
MT
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggaaactaaacctttcctatctctggggaactcgccaacctctcgcagcagcaggtgg
aagccctccagcagagaagaactcccagactggagcacacttctcctgccccgtagccac
tccagagggttcctgaaaccccagtgttcactaccgccaccgtctcagcatggccgttct
atggagtctgagagctcaccgactgcctgctcctgcttcactggcatgtgcccacttcac
cagcgacggatatctacagactcctcaagccagctgtccccctcgtccctgggctcaccc
acagcacacccgctacacccgtcccttctcagccccacctcaatgggctcctctggccag
ctccactcacccatctgcaccctcaactcgcccataaacggcctgggttcgcccttctcc
gtcatcagctcgcccatgggccaccactccatgcctgcgcccccgacttcagccatgggc
tttggccccagcatcagtccacagcttaactccccaatgaacccggtcagcagttcggag
gacatcaagcccccactgggtctgaatggggtgatgaaggttccagcacagccctcaggc
acctcactctcacacactaaacacatctgtgctatctgtggagaccgctcctcggggaag
cactacggagtgtacagctgtgaaggttgcaagggcttcttcaagaggacagtgagaaag
gacctaacctacacctgccgtgacaacaaggactgcaccattgacaagcgtcagcgtaac
cgctgtcagtactgccgctaccagaagtgtctggccatgggcatgaagagagaagtcttg
ttaaatacagctgtccaggaggagcgtcaacgagcgaaagaccgcaatgaaaacgaggta
gagtccaccagcagtgccaatgaggacatgcctgtggagaagatactagaggctgaactc
gctgtagagcccaagacagaaacctacattgagggcaacttgagtgtgccctccaactcg
cccaacgaccctgtcaccaacatctgccaagccgcagacaagcagctgttcaccctggtc
gaatgggccaaaaggatcccgcacttctccgagttgccccttgacgatcaggttattctc
cttcgagcaggctggaatgaacttctcatcgcgtcattctcacaccgctcaatagcagtg
aaggatggcatcttgttggccactggccttcacgtccatcgcaacagtgcccacagcgcg
ggagtcggcgccatctttgacagagttttgacggagttggtgtccaagatgagagacatg
cagatggacaagacggaactcggctgccttcgtgccattgtcctcttcaatccagactct
aaaggtctatcgaaccccggagaggtagaagcactgagggagaaggtatacgcttcacta
gaggcctactgcaaacacaagtatccagaccagcctggaaggtttgccaaacttctgctg
cggcttcctgccctgcgctccattggcctgaaatgtctggaacaccttttcttcttcaag
ctgatcggtgacacgcccatcgacacctttctcatggagatgctggaagcgccacaccaa
atgacttaa
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