Scleropages formosus (Asian bonytongue): 108938581
Help
Entry
108938581 CDS
T04919
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfm04131
]
108938581 (vps13a)
Membrane trafficking [BR:
sfm04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
108938581 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
DUF2750
Motif
Other DBs
NCBI-GeneID:
108938581
NCBI-ProteinID:
XP_018614766
LinkDB
All DBs
Position
17:complement(13122106..13169734)
Genome browser
AA seq
3231 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAILKNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPTQEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDAVTNPNSPLSFGVSLQ
NLSLQTADQNWTPCLLDEKSKLFFKLVRLDNLFAYWNVNSELYSSHSPDEALMYLRNSIA
VKGAIPQDYDFVFSPISANAKLRMNPRADVDFSSPKVDLVVNLPEVAVELKRPQYVNILE
LLGSIDLMSRNLPYRKYHPNVPVHTNAYQWWQYAITGILEVNVKPRLHMWSWKDIRKHRQ
KVKTYKELYKKKITSKKPTEDVLKKLEEPEKTLDIFNITLARQQAEMEAIKAGLRIYRPG
VKPEEEESQGWFGWMWSWSGDSSTQKEVKSGGFDELMTPAEKAKLYTAIGYSETAVNPNL
PKNFEAMKIKFQLVSMSVSIKEDKDKPEIIKLDVIDLRAMLAQRPGAQAIKISAQLNSFE
VTGLPRNKSAPILLSSRSVATESKNPLLSVMFDTNPLDVSADQCLHVESQPLEIVYDAMT
VNSLSAFFMPPQDLELEELTSATLMKLEQFKDRTSTGLMYIIETQKVLDLKVNLMASYVI
VPQTGFYDSSKNVMVLDLGHFKVSSQSRKGLPQLSAGHSTIEDIMSRAYDSFDVNLSSLQ
FLYSKPGGDWKKARKLKQSDLHILEPVDLKVVFSRAMVVTDSRMPKFKISGELPRLSLRI
SDDKVRGVLQLVDSIPLPESRPAPRSSGNQATPKAPKQSYTPQLTPRKPPMADLRSSLIF
DSGSEEELFYDAPSSPIDDMPFFDVSSGSLSRSQSVKKKSVVLKDPKKNMTEFQMTFEIS
EFTVQLCRLSSSHEITVLQLDIEGLGTELKLRTFDMSSNTFLREICLKCPEYMDAEQKPV
QLITTLDNTEEDLLTLEYIKADKNGPEFKSLYKNTEQLIKVNFSSLDVHLHIEALLNSMN
FLNSLLPPQKKETQEELPTIPEEEEEEGEKKEASIARKLSAKKSKFEDVVNLHIRADLSC
LKMFIRGQKARISEISIEGLVSEVLMKKKSVEVLAHLKNIVILDCDQDALYKKAVSIAGK
EVFDFHLINYVDATEGDAYMDMRIVDTSVTLTVGCIQVIFLNKFVSSILAFINNFQTAKE
ALAEVTVQAAEKAATGVMELAERSTRISLDVDIKAPVVFVPQSSTSRNVIVADFGLVTVK
NHFYMVSSKTHKKIPPVIDVITVGLSDLKMYRTTYEAGRFQSEIQLLQPVNLDLSIERNL
SSSWYHSIPDNEITAHLKPMNLVLSQEDLTVVLRTLNENLSETSGTVQPPVPGDKSDTVS
TKESQNSGGNTVVTAAVVESQKVSKLKNTLKLDFKFDCMTLVLYSPSGNEARLLDSRDEQ
LKLAEFKLGTISTAVHMFSDSSMKASVKLANCLLDDKRQSVKNITARMVEMKPGAEKNVM
MEVNYRQGREGTTLDTVVQDIYLCASMEFLLTVADIFVKASKEGFSSPQKAPSKAPPSSR
EAAPTQPIVARTEMNVVVKNPEIVFVADLTRANAPALVVTTQCELIMKSDPETQKMTAAI
RDLKVVACPFLRESRKNNITTVLQPCEVFFQSTQSPNTPQSMDLCISSLTLKVSPIIINT
VITIQSALSPTAETPQELESPVPPNLWDKKSWRELKLWFLEEESDEDALTVAPLVPKGES
MQMTISSICVTLEAGVGHRTMPMLLAKASFQGGVKNWTTLINLHSNINLEVHYYNEMMGV
WEPLLEPLEDEAKDGFRPWTLGIKMKKKPVTYTATCDEVDYSVPDYKTVISISSKDQLNI
TLSKCGLGMLSNLGTAFAEAASQTAECFQKDQAPFVIKNCLGLPVSVVHSEMFSPIGTMS
QSGRVEMQDGDSLNMDYLRTTSDTDQFSAMTCLSGKNYYIQPIPDGHSAASIIPLIKVGR
GMYSVIHKDSGVKRFIVCQIYTVEGSKYVKIRSPFQIINHFSIPFRVFEGSTLLGIALPT
EEFCVPLGSYRSALSLQPLTEGKEYDRSEGFSYETLSTHVGQCLTQTCCRTRPGNHDERA
IVVNLVPLKDTLMSHSTEDAFDEPYILHLWSTVLLRNLLPYPIMFSLQENGNSPVTLQEG
HSAEIHTAVMDQSRLNLRLLGYLDQDWQAEYSLRQDQDEISFIVFQSLRKEEEESKQAEL
DIAIHVKYNPGQTVLALHSPYWMVNKTGRLLQYKADDIHRKHPKEYDKPLLFSFKPRNFL
QNNKVRLMVSDSELSDDFSLDTVGSYGDVKCKGRTKDYLVGVKIDASSFSLTRIVTFVPF
YMLVNATKHIIKISEEGQENWVEAHPEQQSAVPFWPEKDSKKLRIKVEGCQSTPHSISFH
KQENCLLLHLDNTLGGIVVDVNPTEHSTVVRFSDYHDGAAPFLIINHTKEETLEFLQSRS
ERKKSSNWVADELLEISFSPGEENFPSTQKEKDELAPGKAVYYTWAEPTGSRILKWKCGK
HTGELKSEEDLLLDVNNEGKLFLISFYEGLQRVALFTEERRIFKLLCESEKAELAEQEII
LSLQHMGISLVNNTSRQEVAFIGITSSDVVWEFKPKKRSRWKMMKESSQLENHFMEYMDC
SPVDNLSVELESNLQVSFTPNGLDMRILQPNSCPLRRTFLPAVKVEYSVSARQKSYRVQI
NRIQIQNQLPGAIFPYVFYPVKPPKSVTMDSEPKPLTDVSIVTRSAGRSDISRIKYFKVL
IQEMDLKLDLGFLYAILEVFTQESTNAVSSEQEVELFLKDIENLKTELNHVSAADTSPTS
LYEYFHISPIKLHLSFSLSSGGEDGNREKRETEVIPVQSLNLLLKSIGATLTDVQDVVFK
LAYFELTFQFRTRQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFF
YEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQK
RREAMNKQPTSFREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGMGKGLVG
AVTRPTGGIIDMASSTFQGIKRATQTSQDVESLRPPRFFHEDGVIRPYKEREGIGSQMLQ
KIENGRFAKYKYFAHAKVNESDFLMITKSCIFFVTKGTFGQLTCEWQYCFDEFTKEPMIV
EGRRLRIEAKERVKSVFHAKEFGKIINFRTPEIAKWVLAKLEDARESVPKC
NT seq
9696 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgaatcgctggtggtggacgtcctgaacaggttcctcggcgattacgtggtg
aacctggacagctcgcagctcaagctcggaatatggggaggtgatgcaattctaaaaaat
cttgaaataaaggaaaatgcactgagtcagctggatattccttttaaagttcgagctggg
cacatagggcggctagagctgaagataccctggaagaacttgtacacccagtcagtggaa
gccacactggatggagtctacctgctcattgtccccactgccagtataaaatatgatgca
gagaaggaggagaaacagcttcaggaggcacggcagagggaactgcagaggattgaggag
accaaacagaaagcagcggaacaagagaacccaacgcaagagaagcaggacacatttgtg
gagaaactggtcacacaggtgatcaagaatcttcaggtgaagatctccaacatccatgta
cgatatgaggatgctgtgacaaatcctaattcacctctgtcgtttggagtgtcgctgcag
aatctcagccttcagacggctgaccagaactggaccccatgtttgctggatgagaagtcc
aagctgttcttcaagcttgtccgtttggacaatctgtttgcttactggaatgtaaactcg
gagctctattccagtcacagtccagacgaagccctgatgtatctgaggaacagcattgca
gttaaaggtgcaattccacaagactatgacttcgtttttagtccaatatcagccaacgct
aaactgcgcatgaacccccgggctgatgtggacttctcatcccctaaagtggaccttgtg
gtgaacctcccagaggtggcagtagagctgaaaagaccacagtacgtcaatatcctagag
ctgctggggtccattgatttgatgtctcggaaccttccgtacaggaagtaccatcccaat
gttcctgttcacaccaatgcttaccaatggtggcagtatgcaataactggtatcctcgag
gtgaatgtgaagcctaggctccacatgtggtcctggaaggacatccggaaacaccggcag
aaggtgaaaacctacaaagagctgtacaagaagaagataaccagcaagaagcccactgaa
gacgtcttaaagaaactggaggagcctgagaaaacactagatatttttaacatcacacta
gcacgtcagcaggctgagatggaggcgataaaagccgggctgcgaatctatcgcccgggt
gttaaaccggaggaggaggagtcccaggggtggtttggttggatgtggagctggtctggc
gatagcagcactcagaaggaggtcaagtcaggagggtttgatgaactgatgacgcccgct
gagaaagccaaactctacactgccattgggtacagtgagactgcggtcaatcccaacctg
ccaaagaattttgaagccatgaagataaaattccagctggttagcatgtccgtgtctatt
aaggaggataaagacaaaccagaaatcatcaaacttgacgtcatcgatctaagagccatg
ctggcacagaggcctggagcacaagcaatcaaaatatcggcccagctgaactcattcgag
gtgaccgggctgccacggaacaagtcggctccgatcctgctgtcctcacgaagcgtagcg
accgaatccaaaaatccactgctgagcgtgatgtttgacacaaaccccttggatgtgtcg
gctgatcagtgtctacacgtcgagtctcaaccgttggagattgtgtatgatgcaatgacg
gtgaacagcttgtcagcattcttcatgcctccacaagacctggagctggaagagctcacc
tctgccaccctgatgaagctggagcagtttaaggaccgcacatccacaggtctcatgtat
atcatcgaaacacagaaggttctggacctcaaagttaaccttatggcctcctatgtcatt
gtccctcaaactggcttttacgactcctcgaagaacgtgatggtgttggatcttggacat
ttcaaggtgtccagccagagtcgaaaggggctgcctcagctttctgcaggtcacagcacc
atagaggacatcatgtcccgagcatacgatagcttcgatgtgaatctctccagcctgcag
ttcctctatagcaagcctggtggagactggaaaaaagcacggaagctaaagcagtctgac
ctccacattctggaacctgtggatctgaaggtggtcttcagcagggccatggtggtgaca
gattctaggatgcccaagtttaagatttcaggcgaacttcccaggctctctcttcgtatt
tctgatgacaaggtgcggggggtccttcagctggttgatagcatcccgctccctgaaagt
cgtccagctccccgtagctcaggcaaccaggccacacccaaggcccccaaacaatcatac
acaccccagctgaccccaaggaaaccaccgatggcagacctccgatcctccctcattttc
gattctggctcggaggaggaactgttctatgatgctcccagctcgcccattgatgacatg
ccatttttcgacgtcagtagcggttccctgtcacgtagccagtctgtgaaaaagaaatcg
gtggttctcaaagaccccaagaagaacatgaccgaattccagatgacctttgagatcagt
gagttcacggtgcagctgtgccgtctatctagcagccatgagatcaccgtcttgcagctg
gacattgagggccttggcacggagctaaagctgcgcaccttcgacatgtcctccaacacc
tttctccgagagatctgccttaagtgccccgagtacatggatgctgagcagaagccagtt
caactcatcaccactctggacaacaccgaggaggacctactgacactggagtacatcaag
gctgataagaatgggccagagttcaagtccctttacaaaaacacagagcagcttataaag
gtgaacttctcctcgctggacgtgcatctgcacatcgaagctcttctcaattctatgaac
ttcctgaacagcctcctgcccccccagaagaaggaaacacaggaggagcttcccaccatt
ccagaggaagaagaggaggagggagagaagaaggaagcctccattgctaggaaactttca
gctaagaagtccaaatttgaagacgtagttaatttacacatcagagctgacctgtcctgc
ctgaagatgttcattcgtggtcagaaagcacggatctcggagatcagcattgaaggcctt
gtttctgaggtgctgatgaagaagaagtcggttgaggtcctggcacacttgaagaatatt
gtcatcttggactgtgaccaggatgctctctataagaaggcggtatccattgcaggaaag
gaggtgttcgactttcatttgatcaactatgtggacgcgacagagggagacgcctatatg
gacatgcgcattgtggacaccagcgtcacacttaccgttggctgcatacaggtcatattc
ctcaacaagtttgtctcttccattttggccttcatcaacaacttccagacagccaaagaa
gccctggctgaggtgacagtccaggcagcagagaaggctgccactggggtgatggagctg
gcagagcgcagcacacgtatctccctggatgtggacatcaaggcacccgtcgtcttcgtg
cctcagtcctccacctcacgcaatgtcattgtcgcagactttggtcttgtcacggtcaag
aaccacttctacatggtgtcgtccaagacccacaagaagatccctccagttatcgatgtc
atcacggtgggactgagcgatctgaagatgtacagaaccacttacgaagcaggcaggttc
cagagtgagatccagttacttcagcctgtcaacctggacctgtctattgagcgaaatctc
tcgtcgtcctggtaccacagcatcccagataatgaaatcacagctcacctcaagcccatg
aatctggtgctcagtcaggaagacctgacggtggtgttgcggacgctgaacgagaacctg
tcggagacatcgggcaccgttcagcctcccgtccctggggacaagtcagacacggtgtcc
accaaggagtcccagaactctggagggaatactgtagtcacagcagcagtggtggagagt
cagaaagtgagcaagctgaagaatactctgaagctggacttcaagtttgactgcatgacc
ctggtcctatacagccccagtggcaacgaggcccgcttgctggactcccgtgatgagcag
ttgaagctggcagagttcaagctggggaccatctccacagccgtgcacatgttctcagac
agctccatgaaggcctctgtgaaacttgccaactgtctgctggatgacaaacgacagagt
gtgaagaacatcaccgccaggatggtggagatgaagccgggggcggagaagaacgtgatg
atggaagtgaactacagacagggtcgggagggcactaccctggacacagtggtgcaggac
atttacctctgtgccagcatggagttcctgctcactgtggctgacatctttgtcaaggcc
agcaaggagggtttctccagcccgcagaaggcccccagcaaggcccccccgtcatccagg
gaggcagctcccactcagcccatagtggccaggacagaaatgaatgtggtggttaaaaac
cctgaaattgtgtttgtggccgacctcactcgagccaacgctcctgccctcgtcgtaaca
acgcagtgcgagttgattatgaagagcgaccccgaaactcagaagatgacagcggcgatt
agggacctgaaggtggtggcctgccccttcctgagggagagcaggaagaacaacattacc
acagttctacagccctgcgaggttttcttccagagcacccagtccccaaacacaccccag
tccatggacctctgcatcagctccctcacgctcaaggtttcccccatcatcattaacacg
gtgataaccatccagtcagccctgtcccccaccgctgagacccctcaggaactggagagt
cctgtgcccccaaacttgtgggataagaagagttggcgagagctgaaactctggttcctg
gaggaggagagcgatgaggatgccctcaccgttgctccactggtgcccaagggggagtct
atgcagatgaccatcagctccatttgcgtgaccctggaggctggtgtgggccaccgcacc
atgcctatgctgttggccaaggcctctttccaaggtggtgtgaaaaactggaccacctta
attaacctgcatagcaacatcaacctggaggttcattactacaatgagatgatgggggtg
tgggaacctcttctggagccattggaggatgaggcaaaagatggattcaggccctggacc
ctggggatcaagatgaaaaagaagcctgtgacatacacagctacctgtgacgaagtggac
tacagtgttcctgactataagactgtcatcagcatcagctccaaagaccagctaaatatc
acgctgtcaaagtgtggactgggcatgctcagcaatctgggcacggcgtttgcagaggca
gccagccagacagcagagtgcttccagaaagaccaggccccctttgttataaagaactgt
ctgggtctaccagtgtccgtcgtccacagtgagatgttcagccccatcggtaccatgtcc
cagagtggaagggtggagatgcaggatggggatagcctcaacatggattacctccgaacc
acctcagacactgaccagttctcagccatgacctgcctaagtggaaaaaactactacata
caacccattcccgatggccactcggcggccagcattattccactgatcaaagtgggccgt
ggcatgtacagcgtcatccacaaggactcaggagtcaagcgttttatcgtctgccagatc
tatactgtggaaggcagcaaatacgtgaagatccgttcacccttccagataataaatcat
ttctcaataccgttcagagtgtttgagggctcgacacttctggggatagcgcttccaacg
gaagagttctgcgtacctctcgggtcctatagatcagcccttagtttgcagccccttacg
gaaggaaaggagtacgaccgctccgaggggttcagctacgaaactctcagcacacacgtg
ggccagtgcctgacgcagacctgctgccgcactcgacccggaaaccatgacgaacgggcc
atcgtggtcaaccttgtccctttgaaggacaccctgatgtcccacagcactgaggatgca
tttgatgagccgtacattctacacctgtggtccactgtcctgctcaggaacctgctgcca
taccccataatgttctccctgcaggagaacggaaactcacctgtcacactacaggagggc
cactccgccgagatccacacagccgtcatggaccaatcgcgcctaaatctccgcctcctg
ggctacctggaccaggactggcaagccgagtacagcctgcgccaggatcaggatgagatc
agcttcatcgtcttccagtccctccgcaaggaggaagaagagagcaaacaagccgagctc
gacatcgccatccacgtgaagtacaaccctggccagactgtgttggccctgcactccccg
tactggatggtcaacaagaccggccgactgctgcagtacaaggcagatgacatccaccgc
aagcatcctaaagagtatgacaaacccctcctgttctctttcaagcctcgcaacttcctg
cagaacaacaaggtgcgcctcatggtgtcggacagcgagctttcagatgacttctccctg
gacacagttgggagctatggtgatgtgaaatgtaaagggaggaccaaagattatctggtg
ggggtaaaaatcgatgccagcagtttcagtctgacccggattgtgaccttcgtgccgttt
tacatgctggtgaatgcaaccaagcacatcatcaagatcagtgaggagggccaggagaac
tgggtcgaggctcacccagaacagcagtccgctgtcccattctggcctgagaaggattcc
aagaagctgaggattaaggtggaaggctgtcagtctacgcctcattccatcagtttccac
aagcaggagaactgcctgctgctacatctggacaacacgcttggtgggatcgtggtggat
gtgaaccccactgaacactcaacggtggtccgcttctccgactaccacgatggcgctgcc
ccgttcctcattatcaaccacacaaaagaagagactctggaattcctccagagccgctcg
gagcggaaaaagtcctcaaactgggttgcagacgagctcttggagatctcattctcccca
ggagaagagaacttccccagcacacagaaggagaaggatgaacttgctccagggaaggca
gtctactacacctgggcagagcccacagggtcacggatcctcaagtggaaatgtgggaaa
catacgggagaactgaagagcgaggaggacctgcttttggatgtgaacaatgaggggaag
ctattcctgatctcattttacgagggcctccagcgggtggcgctcttcaccgaggagcgg
cgcatcttcaagctgctctgcgagagtgagaaagctgaactggcggagcaggagatcatc
ctgtccctacagcacatgggcatctcgctggtgaacaacaccagcaggcaggaggtggcc
ttcatcggcatcaccagctccgatgtggtgtgggagttcaagccaaagaagaggtcaagg
tggaagatgatgaaggaaagttcgcagctggagaaccacttcatggagtacatggactgc
agccctgttgataacctgagcgtggagctggagtccaacctccaggtttcctttactcca
aatggcttggatatgagaatcctgcaacccaacagctgtccgctgaggaggaccttcctg
ccagccgtgaaggtggagtacagtgtgtcggcccgtcagaagtcttaccgtgtgcagatc
aacaggatacagatccagaaccagcttcctggagcaatcttcccttatgtcttctaccct
gtgaaacccccaaaatctgtcaccatggactcagaacccaaacccctgaccgacgtcagt
attgtaaccaggtctgctggacgctcagatatttctcgcatcaagtacttcaaagtgctg
atccaggagatggacttgaagttggatcttgggttcctttatgccattcttgaagttttc
acacaggagagcacaaatgcagtttcctcagaacaggaggtggaattgtttctgaaggac
attgagaatctgaagacagaactgaaccacgtttctgcagcagacacttcgcccaccagt
ctttatgagtacttccacatttcacctattaaactgcacctgagcttctccttgagctct
gggggtgaggatggcaatagagagaagagagagactgaggtcatccctgtgcagtctctc
aacctgctgctgaagagtatcggtgccacactgaccgacgtgcaagatgtcgtattcaaa
ctggcttactttgagctgacctttcagttccgaactagacagcagctgcagtgggaagtc
ataaggcattactctaaacaggctatcaagcaaatgtatgtgctcgtcctggggttggat
gtgttgggcaatccatttggtttgatcaggggtctgtctgagggtgtggaggcctttttt
tatgaaccatatcagggtgccatccagggaccagaggaatttgtcgaaggtatggccctt
ggtgtgaaggcactggtaggaggggcagtgggcggcattgccggcgcagcctcccggatc
acaggtgccatggcaaagggtgtggctgccatgaccatggatgaagagtaccagcagaag
cgccgtgaagcgatgaacaagcagcccactagttttcgggagggcctgacacgggggggc
aagggattagtgtctggttttgtcagtggcatcacagggatcgtcaccaagcccattaaa
ggtgcacagaaggaaggcgcagcaggcttctttaaggggatgggcaagggcctagtgggt
gctgtgacacggcccacagggggcatcattgatatggccagcagcaccttccaaggaatc
aagagggcaacacagacatcccaggatgtggaaagcttgcggccaccacgcttcttccac
gaggatggggtgatccggccctacaaagagagggaaggcatagggagccagatgttacag
aaaattgaaaacggacgatttgccaagtacaaatacttcgctcatgccaaggtgaatgag
tcagatttcctgatgattacaaaaagctgcatattttttgtgaccaagggcacatttgga
cagttgacctgcgagtggcagtactgtttcgatgagttcacaaaagagccgatgatcgtg
gaaggaaggcggctgcgcatcgaagccaaggagagagttaagtctgtgtttcatgccaaa
gagtttgggaagattataaacttcagaactcctgaaattgccaagtgggttcttgctaaa
ctggaggacgcaagagagagtgtccccaagtgctaa
DBGET
integrated database retrieval system
