Scleropages formosus (Asian bonytongue): 108938709
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Entry
108938709 CDS
T04919
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
108938709 (col25a1)
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108938709 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108938709
NCBI-ProteinID:
XP_029107454
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Position
5:complement(14029163..14172928)
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AA seq
639 aa
AA seq
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MEESRKSPHAGRDRCSTSVSVLSAALSVASVALCVLLSAHTSEIRARVEELERAHMGGPS
QQQSPAPSEQHLDALIRERLEELLPQHSYDRLVKIRTARQATPECTCPPGPPGKRGRRGR
DGEPGPPGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGP
PGPPGPPGPRGPPGDTGKDGPRGIPGFPGDKGEPGELGLMGPEGPEGPKGSMGPPGVLGA
NGQKGEMGERGEKGDMGEDGEKGERGEKGDAGSSAAGIKGEPGEPGRGGQKGEPGLPGLP
GLPGIKGEPGFMGPQGEPGLPGLPGTKGERGEQGPPGKGERGEVGPMGQKGAQGEPGPPG
HKGSKGESGEKGESGSMGPRGPPGLKGDQGTTEIIDYNGNIQEALQKITTITVTGPPGLP
GPPGPQGTKGEQGPPGPPGLDGERGLKGSKGDMGMPGVPGEKGATGLPGLPGVNGLKGEK
GDLGLPGPQGPSIIGPPGPPGPHGPPGPMGPHGFPGAKGEAGSPGAKGVRGEPGHKGDRG
PLGLPGASGLDGKPGARGMDGPVGPTGPAGPKGDRGERGPPGEPGPRGPYGLPGTAGTPG
LDGFRGFKGEKGEPGQPGLDGLDAPCQLVQYPLSYLICA
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggaggagagccggaagagcccccacgcgggacgggaccgctgcagcacctcggtcagc
gtcctgtccgcggcgctctccgtggcgtccgtggcgctctgcgtgctgctgagcgcgcac
acgtccgagatccgagcccgcgtggaggagctggagcgcgcccacatggggggtccgagc
cagcagcagagccccgcaccgtccgagcagcacctggacgcgctcatccgggagaggctg
gaggagcttctgccccagcactcctatgaccgtttggtgaagatccgcactgcgcgacaa
gcgactccggagtgcacctgtccgccaggccctccaggaaagagaggaaggcgaggcaga
gatggtgaacctggacctcctggtcctcctggcccgaaaggtgacaagggggatcagggt
gaccagggcccgcggatggtcttccctaagatcaatcatggctttctttctgctgatcag
cagctcataaagcgacggctcattaagggagatcaaggtcaggctgggcccccaggcccc
cctgggccaccaggtccccctggacctcgaggccccccgggggacactggcaaagatggt
cccagaggaataccagggttcccgggtgataaaggagagcctggagagttgggactgatg
ggacctgaaggacctgaaggacccaagggctctatgggtccacctggagttctgggcgct
aacggacagaagggtgaaatgggagaacgaggtgaaaagggcgacatgggcgaagatgga
gagaaaggtgaaaggggtgaaaagggggacgccggctcatctgcagctggaattaagggt
gaaccgggggagccaggccgagggggacaaaagggagaaccaggactcccaggactacct
ggactccccgggatcaagggagaacctggattcatgggaccgcagggagaaccggggctg
ccaggcctgccaggaactaagggagagcgaggcgagcagggcccaccaggaaagggagaa
cgcggtgaggtcggacccatgggacagaagggagcacagggagaacctgggcccccaggt
cacaaaggatcaaagggggaatctggagaaaaaggagaatcgggttctatgggtcctcgg
ggcccaccaggactgaagggcgaccaaggaaccacagagatcattgactacaacggaaac
atccaggaagccctgcagaagattaccactattacagtgacgggtcctccagggcttcct
gggccaccaggaccgcaggggacgaagggagaacagggtccccctggtcccccaggatta
gacggagagcggggcctgaaggggtccaaaggagacatgggaatgcctggagtacctgga
gaaaaaggagcaacaggcctgcctggccttcctggtgtcaatggcctgaaaggagagaaa
ggggaccttggccttcctggtccccaaggaccctcgattatcggacctcccggacctcct
ggaccccatggccccccaggccctatgggtcctcatgggtttcctggagcaaagggagag
gccggttcacccggtgcaaagggagtgcgtggggagccaggccacaagggtgaccgtgga
cccctgggcctccctggagcgtccggcttggacggcaaaccaggagcaaggggaatggat
ggtccagttggtcctacaggcccagctggtccaaagggagacagaggtgaacgaggacca
cctggagaacctggacccaggggaccctacgggttacctggcaccgcaggcactcctgga
ctcgacggattccggggatttaagggtgagaagggagaaccagggcaacctggtctggat
gggttggatgccccttgccaattggtacagtatcctctttcctacctaatctgtgcatga
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