Scleropages formosus (Asian bonytongue): 108938795
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Entry
108938795 CDS
T04919
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03020
RNA polymerase
sfm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108938795 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
108938795 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108938795 (polr2b)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108938795 (polr2b)
Enzymes [BR:
sfm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108938795 (polr2b)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108938795 (polr2b)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108938795 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
108938795
NCBI-ProteinID:
XP_029107938
LinkDB
All DBs
Position
5:13386471..13396212
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTAECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKEKRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPSRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLAEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagacatccaatatgatgaggatgatgatgaaatcacccctgat
ttgtggcaggaagcctgctggattgttatcagctcttactttgatgagaagggtcttgtg
cgtcagcagctggattcttttgatgagttcattcagatgtccgtgcagaggattgtagag
gatgcccctcccatcgatctccaggcagaggcccagcacacctcaggggaggtggaggag
ccgccaagatacctgttgaagtttgaacagatctacctgtctaaacccacccactgggag
agagatggggcaccgtcacccatgatgcccaatgaagcccgactccgaaatctaacgtac
tctgccccactgtatgtggatatcaccaaaactatcatcaaagagggggaggagcaactg
cagacacagcaccagaaaaccttcattggcaaaattcccatcatgcttcgctccacatac
tgcctgctgagtggtctgacagatcgtgatctttgtgagctgaatgagtgtcctctggac
cctgggggttactttatcatcaatggctcagagaaggtgctcattgctcaggagaagatg
gctacaaacacagtgtatgtgtttgccaagaaggactccaagtatgcatacacggccgag
tgtcgctcctgcctggagaactcatctcgtcccaccagctcaatctgggtcagcatgatg
gccaggggtggacagggggtgaaaaagagtgctattggccaaaggattgtctccacactc
ccctacattaggcaggaagtccccatcatcattgtgtttcgtgctctgggctttgtgtct
gacagagacattctcgaacacataatctatgactttgatgaccctgagatgatggaaatg
gtgaagccttctttggatgaagcctttgtgattcaagagcagaatgtggcattaaacttc
attggatcaagaggtgccaagccaggtgttaccaaggagaagagaatcaagtatgccaaa
gaggtgttgcaaaaggaggtgctgccccatgtgggggtcagtgatttctgtgagactaag
aaggcctactttttgggctacatggtacacagactccttctggctgctctgggcagacga
gaactagatgacagggatcactatggtaacaagaggcttgacctggctggtcctctgctg
gccttcttgttccgtggaatgtttaaaaatctgttgaaggagattagaatatatgcccag
aagttcattgacagagggaaagatttcaatttggagttggccatcaagacgcgcataatt
tctgatgggctgaagtactcacttgctactgggaactggggagacgttaagaaggctcat
caggccagagctggggtgtcacaggtattgaaccgcttgacctttgcctctacactctcc
cacctgcggcgagtcaactcccccattggaagagacggcaaactggcaaaacccaggcag
ctgcacaacacactgtggggcatggtgtgtcccgcagagacccctgagggtcatgctgtc
gggttggtgaagaacctggcactcatggcgtatatttccgttggctctcagccatccccc
atattggagttcttagaagagtggagcatggagaatctggaggaaatttctcctgcagcc
attgcagatgccaccaagatttttgttaatggctgctgggtggggatccacaaggaccca
gaacagttgatgaatacactgaggaagttgaggaggcagatggacatcattgtgtctgag
gtgtcgatgatccgagacatcagggagagagagatccggatctatacagacgctgggagg
atctgccgccctctgttgattgtggagaagcaaaagctactgctgaagaggcggcacatc
gaccagctgaaggaaagggagtacaacaactacagttggcaagatctggtggccagtggg
gtggtggagtacattgacacactagaggaggagactgtgatgctggccatgaccccagat
gacctgcaggagaagggtgtggcctattgttccacatacacccactgtgagattcaccct
tccatgattttgggtgtctgtgcttccatcattcctttccctgatcacaatcagtcaccc
agaaacacataccagtcagctatgggtaaacaagctatgggggtgtacatcaccaacttc
cacgtacgcatggacaccctggcccatgtgctttactacccccaaaagcccctggtgacc
acgcgctccatggaatacttgcgattccgagagttgccagcaggcatcaattccattgtg
gcaattgcatcatacactgggtacaatcaggaggactctgttatcatgaaccgctctgct
gtggaccgtggatttttcaggtctgtgttctacagatcatataaagaacaggaatctaag
aaaggctttgatcaggaggagatatttgaaaaaccctcacgtgagacttgtcagggaatg
cgacatgccatctacgacaagctagatgacgatgggctcatcgcaccaggtgtgcgcgtg
tctggtgaggatgtcatcatcgggaagactgtgacacttccagaaaatgatgatgagctg
gatagtacaaacaaacgctataccaagcgagactgcagcactttcctacgtaccagcgag
actggcattgtggatcaggtcatggtcacgctcaaccaggaggggtacaagttctgcaag
atcagagttcgttcagttcgaatcccccaaatcggagacaagtttgccagtcgacatgga
caaaagggtacctgtggtatccagtacaggcaagaggacatgccctttacatgtgaagga
attactcctgatatcatcattaacccccatgccatcccttctcgaatgacagtcggccat
ttgatcgagtgtctgcagggcaaggtatcggcaaacaaaggggaaattggtgatgccaca
cctttcaatgatgctgtgaacgtgcagaaggtctctaacctgctggctgaatatgggtat
cacctgaggggtaatgaggtgttatataacgggttcacgggtcgtaagctcacctcacag
atcttcattgggcccacatactaccagcgtttgaaacacatggtggatgacaagatccac
tctcgggcccgcgggccagtccagatcctcaacagacagcctatggagggtagatctcgt
gatggagggctacgtttcggcgagatggaacgtgactgtcagattgctcatggagctgcc
cagttcctgcgggagaggctgtttgaggcctccgatccataccaggttcatgtgtgcaac
ctgtgtggcctgatggccattgccaacacccgcacacacacctacgagtgcaggggctgc
cgcaacaaaacacagatctccttggtcaggatgccctacgcctgcaagcttctcttccag
gaactgatgtctatgagcatcgccccacgtatgatgaccagttaa
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integrated database retrieval system
