Scleropages formosus (Asian bonytongue): 108938804
Help
Entry
108938804 CDS
T04919
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108938804
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108938804
03009 Ribosome biogenesis [BR:
sfm03009
]
108938804
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108938804
Spliceosome [BR:
sfm03041
]
Complex A
U2 snRNP components
U2 related factors
108938804
Complex B
108938804
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
108938804
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
90S particles
Helicases
108938804
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
ABC_tran
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
108938804
NCBI-ProteinID:
XP_018615242
LinkDB
All DBs
Position
5:complement(12750156..12773011)
Genome browser
AA seq
764 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRMSSEGKDRDRDRDRDERSRDRDRDRDRDRDRDRDKESRVPS
SPPVNPPLPGGGLPPLKPAAQQQINPFTNLPHTPRYYEILRKRLQLPVWEYRERFSDILS
RHQTFVLVGETGSGKTTQIPQWCVDMVRALPGPKRGVACTQPRRVAAMSVAQRVADEMDV
MLGQEVGYSIRFEDCSGAKTLLKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDI
LMGVLKEVVRQRADLKVIIMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDY
LEAAIRTVIQIHMCEEEEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYST
LPPQQQQRIFEPPPPVKPNGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRI
RVESLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVV
LQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQL
AKMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVY
HAFKQNHESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRR
ALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCT
DIKPEWLLKIAPQYYEMSNFPQCEAKRQLERILAKLQTKEYSQY
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacatcggttagatttaggggatgattattcatccagcaaaaaaagaatg
tcttccgaaggcaaagaccgggaccgcgatagagatcgtgatgagcggtccagggaccga
gatcgagaccgagacagagaccgtgaccgagatcgagacaaagagagcagggtacccagc
agtccccccgtgaacccaccacttccaggtgggggcttgccaccattgaagccagctgcc
cagcaacagataaaccctttcaccaatcttcctcacacgccgcgctactacgagatcctg
cggaagcgtctgcagctgccagtatgggagtaccgggaacgctttagtgacatcctctct
cgccaccagacgtttgtgctggtcggcgagaccggctctgggaaaaccacacagatcccc
cagtggtgcgtggacatggtacgtgcactgccggggccaaagaggggtgtggcctgtaca
cagccccgccgagtggcagccatgagtgtggcccagagggtggctgatgagatggatgtc
atgctgggccaggaagttggttactctatcagatttgaagactgcagtggtgccaagacc
cttctcaagtacatgactgacggcatgttgcttcgggaggccatgaatgaccctctcctc
gaacgctatggtgtcatcatcttggatgaggcccacgagcgcacactagccactgacatt
ctcatgggcgtcctgaaagaggttgtccggcagagagcagacctgaaggtgatcatcatg
agcgccacattggatgctggcaagtttcaggtgtattttgacaactgcccactgctcacc
atccctggacgcacgcaccctgtcgagatcttctacacgcctgagccagagcgagactat
ctggaggcagcaatccgcactgtcatccagattcatatgtgtgaggaggaggagggagat
gtgctgctcttccttaccggccaggaggaaatcgatgaggcctgcaagcggatcaagcgg
gagatagatgacctaggtcctgaagttggagacattaaaatcatccccctatattccacg
ctgccccctcagcagcaacagaggatcttcgaaccgccacccccggtgaaacccaacgga
gcgattggacggaaggtagtggtgtcgacaaacattgctgagacgtcgctgacaattgac
ggcgtggtgtttgtaattgatcctggatttgccaagcaaaaggtatataacccacgcatc
cgtgtggagtccctactggtgactgccatcagcaaggcatcggcgcagcagagagcagga
cgtgccggcaggacacgcccagggaagtgcttccgcctctacacagagaaggcctacaag
acagagatgcaggacaacacataccctgagattctgagatccaacctaggttcagttgta
cttcagctgaagaaactgggcatcgatgacctggtgcactttgacttcatggacccccct
gcccccgagaccctgatgcgtgctctggagctgctcaactatctggcagccctaaatgac
gatggtgacctgactgagttgggttccatgatggcagagttccccttagaccctcagctg
gccaagatggtgattgccagctgcgagttcaactgctccaatgagatcctgtccatcacg
gctatgctgtcagtcccgcagtgtttcgttcgtccaacggaggcaaagaaggcagccgat
gagtccaagatgaggtttgcccacatcgatggagaccacctgactctgctcaacgtctac
catgccttcaaacagaaccacgagtcggtgcagtggtgctacgacaactttgtcaactac
cggtcgctcatgtcggccgacaacgtgcggcagcaactctccaggatcatggaccggttc
aacctgccacggcggagcacagaattcaccagccgggactactacatcaacatccgccgt
gcccttgttacgggattcttcatgcaggtggctcacctcgagcgcacgggccattacttg
accgtgaaggacaaccaggttgtgcagctccacccgtccacagtcctggaccacaagcct
gagtgggtgctgtacaatgagtttgtgctcacaaccaagaactacattcgcacctgcacc
gacatcaagcccgagtggctgctgaagatcgcaccccagtactatgagatgagcaacttc
ccccagtgtgaggccaagagacaactggaacggatcctggcaaagctgcaaaccaaggag
tactcgcagtactga
DBGET
integrated database retrieval system
