Scleropages formosus (Asian bonytongue): 108939041
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Entry
108939041 CDS
T04919
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1-like isoform X1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04217
Necroptosis
sfm04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
108939041
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
108939041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfm04121
]
108939041
Enzymes [BR:
sfm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
108939041
Ubiquitin system [BR:
sfm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
108939041
Multi subunit type E3
LUBAC complex
108939041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sharpin_PH
LTM
Zn_ribbon_RanBP
IBR
zf-RING_2
ubiquitin
IBR_1
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
108939041
NCBI-ProteinID:
XP_029102284
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All DBs
Position
19:12518307..12534187
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AA seq
702 aa
AA seq
DB search
MALSSGGWATAPPAPSPSFPGFGTSQASSCSTVLMSVRVSVCHSGIRPLCLPGAGDEALR
LQLSMNPGQPGQFRLALRDAGDTGTCRSVSIAEFDLRSVRYELKSPRCHELSLVAPPHDR
ITFNFRCEKEAQEWATVVISSLREAQRVADNNSTEERQLHLEPLEPKNSVSLPRTEDLCL
ELIRAIEAGDTQEASQYAAALARQQVALKIQPSQRSCSDTEINLAVVVEDSSSSCCVTVK
VTPHITIASLKQQVFLDFGFHPRVQRWVMGKCLCADTRSLASYGIRRDGDTAFLYLLSAR
QARLTHQLCQQDQENALLALPPPTNGPSSRLVSQDWRPYSTLPSRLSHRGTGNIVGEVER
LGIGEIRELINLDMPQLNEALGPGTQVGWSCPSCTFINKPTRPGCEICSTDRPESYTVPG
GYQPDALELRRIQQEKEAVRQYQQAREAERRENFARLVMMDGQDLVPNPDSVDCRICYLD
LQPGEGVLLRECLHCFCKDCLRSVILLCEDPEVACPYRDESYACDCVLQEREIRALVTGD
EYERWLQRGLLVAESQCKSSYHCATPDCHGWCEYEDTVNIFHCPVCRKHNCLLCKAIHEG
MNCKQYQDDLTARAVNDLAARRTHDLLKSLVQSGEAMHCPQCGIIVQKKEGCDWVRCTVC
HTEICWVTRGPRWGPGGPGDTSGGCRCNFNKQRCHPKCQNCH
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagctccggcggttgggctacggctcccccggcgccgtctccctcgttcccg
ggcttcgggacgtcacaggccagcagctgcagcacggtgctgatgtcggtgcgggtgtca
gtgtgccactcggggatacggccgctctgtctgccgggggcgggggacgaagccctccgc
ctgcagctcagcatgaacccgggccagcctgggcagttccgcctggcgctgagggacgca
ggcgacacggggacttgccgcagtgtgtccatagcagagtttgacctgcgctcagtgcgg
tacgaattaaagtctccccgctgtcatgagctgtccttggttgcacctccacatgaccgc
atcaccttcaacttccggtgtgagaaggaggcacaggaatgggccaccgtggtgatatct
tccctgagagaggcacagagggtggcagacaacaattcaactgaagagcggcagctacac
ctggagcctctagaacccaagaactcagtgtccttgccccgcacagaggatctgtgtttg
gaattaattcgggctattgaagctggtgacacgcaggaggcctcacagtatgcagcggca
ttggctcgtcaacaggttgcgctcaagatccaaccatctcagaggagctgcagtgacact
gagatcaacctggctgtggtggtggaagattcttcttcttcctgttgtgtcacagttaaa
gtcaccccccacatcaccattgcatcgctcaagcagcaggtgttcctggactttggattc
catccacgggtacagcgctgggtgatggggaagtgcctgtgtgcagatacacgctcacta
gcatcctatggcatacggcgggatggcgacacagccttcctatatctgctctcagctcgt
caggcccggctgacccaccagctatgccaacaggaccaggaaaatgccctacttgcactg
cctcctcctaccaacgggccaagcagcaggttggtctcccaggattggcggccctacagc
acattgccttccaggctttcccacaggggaacaggcaacattgtgggtgaagtagagaga
cttggaattggtgaaatccgagaactcatcaacctggacatgcctcagctgaatgaagct
ctgggccctggcacacaggtgggatggtcctgtccttcttgtactttcatcaacaagccc
acgcggcctggctgcgagatctgcagcacagaccgacccgagagctacacagtacctggg
gggtatcaacctgatgcgcttgaactgcgtcgcatccagcaggagaaggaagctgttcgg
cagtaccaacaggccagggaggcagagcgcagggagaactttgcccgactggtgatgatg
gacggtcaagacctggtgcccaacccagacagtgttgactgccgcatctgttacctggac
ctgcagccaggagaaggtgtcctgctcagggaatgtcttcactgcttctgcaaagactgc
ctacgctcagtgatcctgttgtgtgaagaccctgaagttgcttgtccatatcgtgacgag
tcatacgcctgtgactgcgtgctgcaggagagggagattcgggcgctggtgactggtgat
gagtacgagcgctggcttcagcggggactattggtggcagagtcgcagtgcaagagcagc
taccattgtgccactccagactgccatggctggtgtgagtacgaggacactgtcaacatc
ttccactgccctgtgtgcaggaagcacaattgcctgctctgcaaggctatccatgagggg
atgaactgtaagcagtaccaagatgacctgacagcacgtgctgtcaatgacttggctgcc
cgcaggacacacgaccttctgaagtccctggtacagtctggagaggccatgcactgccct
cagtgcggcatcatcgtacagaagaaggagggttgtgactgggtgcgatgcactgtctgt
cacactgagatctgctgggtcaccaggggtccacgctggggtcctgggggcccaggggac
actagcggcggatgccgctgcaacttcaacaagcagagatgtcacccaaagtgtcagaac
tgtcactga
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