Scleropages formosus (Asian bonytongue): 108940181
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Entry
108940181 CDS
T04919
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108940181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfm03041
]
108940181
03009 Ribosome biogenesis [BR:
sfm03009
]
108940181
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108940181
Spliceosome [BR:
sfm03041
]
Complex A
U1 snRNP components
U1 related factors
108940181
Complex B
108940181
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
Pre-60S particles
Helicases
108940181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
Cas3-like_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
108940181
NCBI-ProteinID:
XP_018617673
LinkDB
All DBs
Position
20:complement(18857993..18863396)
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AA seq
614 aa
AA seq
DB search
MPGFSDRDRSRDRSYGGGSRFGAGRGGPAPGKFGNPGERLRKKHWNLDELPKFEKNFYKE
HPDVTRRSTQEVEQYRRSKEVTVKGRDCPNPIMKFHEATFPNYVMDVITKQNFTEPTPIQ
AQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEPGDGPICLVLAPTRELAQ
QVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRR
CTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYVQIN
VGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFVETKRRCDDLTRRM
RRDGWPAMGIHGDKSQQERDWVLNEFKFGKSPILIATDVASRGLDVEDVKFVINYDYPNS
SEDYIHRIGRTARSQKTGTAYTFFTPGNMKQASDLISVLREANQAINPKLIQMAEDRGGR
SRGGRGTYKDDRRDRYSGARRDFGSFRDKEKDGGFSSGAQNVFGTKMQNGAFGGVGYNSS
NSNGFGNGYVSNGQSNFGATNQASTFVNPNFQNQQFGGNPGSSQNGMGHPQFAYNAQQQP
QPMVPYPMPPTFPQ
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggttttctgacagagatcgaagccgagacagaagttatggcggcgggtcccgt
tttggtgccggccgtggcggcccagccccgggaaagtttgggaacccaggtgaacggctg
cgcaagaagcactggaacctggatgagctgcccaagtttgagaagaacttctacaaggag
catccagatgtcacacggagatctactcaagaagttgagcaatacaggagaagcaaagaa
gtcacagtgaaaggcagagactgcccaaaccctattatgaagtttcatgaggctactttt
ccaaactatgtgatggatgtgatcactaaacaaaactttactgagcctacacccattcaa
gcccaaggctggcctttggccttaagtgggaaggacatggttggaattgcacagactgga
tcagggaaaactctttcatatctattgcctgcaattgtgcacatcaatcatcagccattc
ctggaacctggtgatggtccaatttgtttagtgcttgctccaacccgtgagctggcccag
caagttcagcaggttgcagctgagtacgggcgtgcatcacgtctaaagtccacttgcatt
tatggaggagcccccaaaggaccacagattcgggatcttgaaagaggtgttgaaatttgc
attgcaacccctggaagacttattgacttccttgaagctgggaagaccaatttaaggagg
tgcacctacctggtcctagatgaggctgacagaatgcttgacatgggctttgagccacag
atccgaaaaattgtcgaccaaatcagaccggacaggcagacccttatgtggagtgccact
tggcccaaggaggtgcggcagctggctgaggacttcttaaaagattatgtgcagattaat
gtgggtgcacttcagctgagcgccaaccacaacatccttcagattgtggatgtgtgtaat
gatggtgagaaggatgacaaacttctccgactgcttgaagaaatcatgagtgagaaagaa
aacaaaaccattatttttgtagagaccaagagacgatgtgatgaccttacaaggagaatg
aggagagatgggtggccagcaatggggattcatggggataagagtcagcaagaaagagac
tgggttctgaatgaattcaaatttggaaagtcaccaatactcattgccacagatgttgcc
tccaggggtctagatgtggaagatgtgaaatttgtcatcaattatgactaccctaactcc
tctgaggactatattcatcgcattggaaggactgcacgtagtcaaaaaacaggcaccgct
tacaccttctttactcctggcaacatgaaacaagccagtgacctcatctctgtccttcga
gaggccaatcaagcaatcaaccccaaactcatccagatggcagaagatagaggaggtcgt
tcaagggggggaagaggtacctacaaggatgaccgccgggataggtattctggtgcaagg
agagattttggtagttttagggacaaggagaaagatgggggctttagcagtggagcacag
aatgtttttggcacaaagatgcagaatggggcttttggaggagttggctacaatagcagc
aatagcaatggctttgggaatggctatgttagcaatggacagtcaaactttggtgctaca
aaccaagctagcacatttgtgaatccaaacttccagaaccagcagtttggaggaaaccct
gggagttcccagaatgggatgggccacccacagtttgcttataatgcgcagcagcagcca
cagcccatggtaccatatcccatgccgccaacttttccacagtaa
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