Scleropages formosus (Asian bonytongue): 108940362
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Entry
108940362 CDS
T04919
Symbol
lsm1
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108940362 (lsm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108940362 (lsm1)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108940362 (lsm1)
mRNA degradation factors
5'-3' decay
Lsm complex
108940362 (lsm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF5321
Motif
Other DBs
NCBI-GeneID:
108940362
NCBI-ProteinID:
XP_018617993
UniProt:
A0A8C9V6Q9
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All DBs
Position
12:8062416..8065097
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AA seq
133 aa
AA seq
DB search
MNYMPGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIP
RGIFIVRGENVVLLGEIDLEKESETVLQQVSIEEILEEQRSQQQAKQEAEKAKTQALKDR
GLSIPRVDMLDEY
NT seq
402 nt
NT seq
+upstream
nt +downstream
nt
atgaattacatgccgggaacagcgagcctcatcgaggatatcgacaagaaacacctcgtg
ctgcttcgggatgggaggacgttgattggctttttaaggagcatcgaccagtttgctaat
cttgttttgcaccaaactgtcgaacgcatccacgttgggaagaagtacggcgacattccg
agaggaatattcatcgtgcgaggagagaatgttgttttgcttggagaaattgaccttgag
aaggagagtgaaacggtgttgcagcaagtctccatcgaggagatactcgaagagcagaga
tcacaacagcaagccaagcaggaagcggagaaagccaaaacgcaagcactgaaagaccga
ggactttccattcccagggtggacatgttggatgaatactaa
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