Scleropages formosus (Asian bonytongue): 108940434
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Entry
108940434 CDS
T04919
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1 isoform X1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfm03016
]
108940434 (trub1)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
108940434 (trub1)
Transfer RNA biogenesis [BR:
sfm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
108940434 (trub1)
Prokaryotic type
108940434 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
GAIN_A
Motif
Other DBs
NCBI-GeneID:
108940434
NCBI-ProteinID:
XP_018618109
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All DBs
Position
3:6074286..6077403
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AA seq
296 aa
AA seq
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MATGVSGVVAAQRCSLSKLQSLNGLFAIYKKQGPTSADVLNQLKRKLFQEAGEKQTNPRK
RKKQALKMGHGGTLDSAASGVLVVGVGGGTKMLTTMLTGSKKYTAVGELGKATDTLDATG
TVTLQKTYGKTKHITKENMEEKLKKFTGEIMQVPPLYSALKRDGQRLSVLLKKGQEVEAK
PARAVTVYHLSLRDFSPPLFTIDVECGGGFYVRSLVDDLGKELSSCAHVKELVRTKQGQF
TLEEHALREDQWTIENIARVLQATPTEPVAESSAEPCPAARPRKDGEEQQGDDQGS
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atggctacaggcgtgagtggagtagtggcggcgcagagatgttctttatcaaaactgcag
tctttgaacggactgtttgctatttataaaaaacaaggtcccacttccgcagatgtatta
aaccaactgaagaggaaactttttcaagaagctggtgagaagcagacgaacccccgaaag
aggaagaaacaggctctgaaaatgggtcacggagggacgctggacagcgccgcctctggt
gtgctcgtggttggtgttggcggtgggaccaagatgttgaccaccatgctgactgggtca
aagaagtacacggccgttggggagctgggcaaagccacggatacgctggatgccacggga
actgtcacactgcagaagacttatggtaagaccaagcacataaccaaggagaacatggag
gagaagctgaagaagttcactggggagatcatgcaggtgcccccactgtactcggctctg
aagagggacggacagcggctctcggtgctcctcaaaaagggccaggaggtggaggcgaag
ccggcgagagcggtcactgtgtaccatctgtccctgcgtgacttcagccccccactcttc
accatcgatgttgaatgtggcgggggattctacgtgcggagtctggtggacgacttgggc
aaagagctgtcctcctgcgcccatgtgaaagagcttgtccgcaccaagcagggccagttc
acgctggaggagcacgcgctgcgcgaggaccaatggaccatcgagaacatcgcccgtgtt
ctccaggccacgcctacagagcccgtcgcggagtcgagcgcggagccctgtcctgccgcc
agacctcggaaggatggcgaggagcagcaaggcgatgatcagggatcttag
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