Scleropages formosus (Asian bonytongue): 108941286
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Entry
108941286 CDS
T04919
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03420
Nucleotide excision repair
sfm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108941286 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
108941286 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfm04121
]
108941286 (ddb1)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108941286 (ddb1)
Ubiquitin system [BR:
sfm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
108941286 (ddb1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
108941286 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
108941286 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
108941286
NCBI-ProteinID:
XP_018619530
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All DBs
Position
11:complement(24921245..24936008)
Genome browser
AA seq
1139 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGENKDLLFILTAKYNACILEYKQTGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRENRELKAFNIRLEELQVIDVHFLYGCQVPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGSVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVM
QNTKTLVSEWKEPQGRNISVAACNSTQVVLAVGRVLYYLEILAGELKQISSTEMEHEVAC
LDITPLGEGGDSPLCAVGLWTDISARILKLPTFTALHKEMLGGEIIPRSILMTTFEGCHY
LLCALGDGALFYFGLDLQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIYS
SNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESP
RRICYQEVSQCFGVLSSRVEVQDASGATSPVRPSASTQALSSSVSSSKLFPSSTSPHETS
FGEEVEVHSLLIIDQHTFEVLHAHQFLQSEYALSMVSCRLGKDPAVYFIVGTAMVYPEEA
EPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRT
ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAIEILD
DDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGEFVNVFAHGSLVLQNLGESS
TPTQGSVLFGTVNGMIGLVTSLSEGWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTERK
TEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq
3420 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtgaccgcgcagaaacccacggctgtcaacgcctgcattacg
ggacacttcacctctgcagaggacttgaatttgctgattgccaagaacacgcggttggaa
atctatgttgtgacggccgaggggctgcggcctgtcaaggaggttggcatgtatggcaag
attgccgtcatggagctcttccgacccaagggtgagaacaaggacctgctgttcatcctg
actgccaagtacaacgcctgcattctggagtacaagcagacgggggagagcattgacatc
atcaccagagctcatggcaatgtgcaggaccgcatcgggcgcccctctgagacgggtatc
attggcattgtagacccagaatgccgcatgatcgggttgcgtctgtatgacggcctgttt
aaagttatccccctggatcgggagaaccgtgagttgaaagcgttcaacattcggctggag
gagctacaggtcattgatgtccacttcctgtacggctgccaggtccccaccgtctgtttt
atctaccaggaccctcaggggcgccacgtgaagacatacgaggtctcactgcgagaaaag
gagttcaacaagggaccctggaagcaggagaatgtggaggcagaagcttcaatggtcatt
ccagttccagaaccttttggaggagctataatcatcggccaggagtccatcacttatcac
aacggagacaaatacctggccatagctcctcccactatcaagcaaagcaccatcgtatgt
cacaaccgcgtggaccccaatggctcacggtacctgctgggtgacatggagggtagactc
ttcatgctgttgctggagaaagaggagctgatggatgggtctgtggtgctaaaggacctg
cgggtagagctgctaggagagacctccattgcagaatgcctcacctacctggacaacggc
gtggttttcgttggctcccgccttggtgactctcaacttgttaagctgaatgtggacagc
aatgatcagggttcctatgtggcagtgatggaaacattcaccaacctcggcccaattgtg
gacatgtgtgtggtggacctcgagagacaaggccaaggacagttagtcacctgctctggg
gcctttaaagagggatcattaaggatcattcgcaacggcatcggaattcacgaacatgca
agcatcgatctgccaggaatcaaaggcttatggcccctgcgctctgaagctgggcgggag
acagatgacatgttagtgctgtcctttgtgggccaaaccagggtactgatgctgagtgga
gaggaagtggaggaaacagagctccctgggtttgttgacaaccagcagactttctactgt
ggaaatgttgctcaccagcagctcattcagatcacctcaggatctgtgcggctggtgatg
cagaacaccaagaccctggtgagtgaatggaaggagccccaggggaggaacatcagcgtg
gctgcctgcaactcaacccaggtggtgctggctgtgggcagagtgctgtactacctggag
atccttgcaggagagctcaaacagatcagctccacagagatggagcatgaggtggcctgt
ttggacatcacacccctaggggagggtggtgactcccccctgtgcgcagtggggctttgg
actgacatctctgctcgcatcctcaagctgcccacctttactgccctacacaaggagatg
ctaggaggggagatcatcccacgctccatcctgatgactacctttgaaggctgtcactac
ttgctgtgtgcactgggggatggagcgctcttctactttggtttggacctccagacaggt
gtcctcagtgagcgcaagaaagtgactctaggcactcagcccactgtcctacgcactttc
cgctccctctccacttccaatgtctttgcctgctctgaccgcccaactgtcatctactca
agcaatcacaaacttgtcttctccaatgtcaacctcaaggaggtcaactacatgtgtcct
ctaaactctgaagggtatcctgatagtttggctctagccaacaacagcactttgaccata
ggcaccatcgatgagatccagaagctacacattcgaaccgtgcccctctatgaatctccc
aggaggatctgctatcaagaggtatcccagtgttttggtgtgctctccagccgggtagag
gtgcaggatgccagcggggctacctctcctgtccgccccagcgccagcacccaggccctg
tccagcagtgtgagctccagtaagctcttccccagcagcacttcaccacatgagacctcc
tttggggaagaagtggaggtgcacagcctgctgattatagaccagcacacctttgaagtc
cttcacgcccaccagttcctgcagagcgagtatgccctgagcatggtttcgtgccgtctg
ggtaaagaccctgctgtctattttattgtcggcacggcaatggtgtaccctgaagaggca
gagcccaagcagggccgcattattgtgttccattacactgatgggaagctgcagacagtg
gcagagaaggaggttaaaggagcagtctactctatggtggaattcaatggaaaactactg
gccagtatcaacagcactgtgcgtctgtatgagtggacagcagagaaggagctgaggaca
gagtgtaatcattacaacaacatcatggctctctacctgaagaccaaaggcgacttcatc
ctggtgggggacttgatgagatcagtgttgctcctggcttacaagcctatggagggaaac
tttgaggagattgcaagagactttaacccaaactggatgagtgctatcgaaatcctggat
gacgacaacttcctaggtgcagaaaatgccttcaacctttttgtctgccagaaagacagt
gcggccaccacagacgaagagcgtcagcacctccaggaggtgggagtcttccacctgggg
gagtttgttaacgtgtttgcccacggatccctggtgctgcagaacctgggtgagagctcc
accccaacacagggttctgtgctcttcgggaccgtcaacggaatgatcggcttggttacc
tcgctgtcggaggggtggtacagtctactgctggatctgcaaaacaggctcaacaaggtc
attaagagtgtgggcaagattgagcacagcttctggaggtcctttcacactgagcggaag
acagagcaggctacgggtttcatcgatggggatctcattgagagtttcctggatctgggc
cgagctaagatgcaggaagtggttagcacacttcagatcgacgatggcagtggaatgaaa
cgtgaagccacagtagatgaggtcatcaagattgtagaagagctgactaggattcactag
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