Scleropages formosus (Asian bonytongue): 108942104
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Entry
108942104 CDS
T04919
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1 isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108942104 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfm03032
]
108942104 (topbp1)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108942104 (topbp1)
DNA replication proteins [BR:
sfm03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
108942104 (topbp1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
108942104 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
BRCT_TopB1_SLF1
ECT2_BRCT0
LIN37
Motif
Other DBs
NCBI-GeneID:
108942104
NCBI-ProteinID:
XP_018620715
LinkDB
All DBs
Position
5:complement(30131269..30149560)
Genome browser
AA seq
1530 aa
AA seq
DB search
MPKGDSAIFIVKFVEDSEQKNEFTEKAYKAIVELQSEKYLQTITEKEALALDHNDKSLYV
FSNFYSPAFHHCRKLGCRVVSPLVILFCLQHQRCVPKAEQPVYNMVMADVTVSCTSLDKA
MRTEVMELVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPILLPTWVKACWEKS
QNSLFQHSELPLEEYLCPVLRGCTVCVTGLSSTERKEVQRLCEQHGAQYTGQLKMNECTH
LIVSEPKGQKYECARKWNVYCVPLHWLFDSIEKGFCQDESHYSVKPHDQKSSRPHTSTPT
GTERHKGTAASLLGVSQISNISLSSVNDSAFTTTSVSRLETPDPLDALDISCCPADDLLD
GCKLFICGLSGKRMEKLRRLVNCMGGLRFNQPREDLTHVVMGDPDQDLIGFISKAAHRPH
VVTVQWLLDVFSGGCLVPVEGYLHPACLPPASSVSITAPHGPATRHSVSSVAAEDPSPSK
NMRAEEELLSQYLGADQTVAELPRPVNASRNNSTLIPEPLSQKSPQDSTLQDPNNSGLFQ
GKRFLLVGFGAAAEAQLSLLVTENGGRVLAVGTRAVADYAVVPLLGCEVEATVGDVTTDT
WLAMCVEQQCLLELTSHPFFMPLTVKEGSTPLQGCVLSVSQFTGAERESLIELAQHLGAS
VQEYFVRTANQRKGMLASTHLVLRTPEGTKYNAAQKWGLPAVTLRWVLESGKRGQCADEN
KFLVDLPPLPEKEEESFVGGSQKPTETSQTSPQIPLLGLQVSSAITPLDVGRFQSKAFRS
VLGQNQQHKGQGSATPGMEGRNTLHREQSLQLDTPSRFLCRDQLFRPSFNVKDALAALET
PGAKSQQNHSAATPLSEVIGRNLKVALANSTRSHTSALAAMTASPKLRMDTEQTMNVPLP
LAGVVMCVSKKLSKKQSELNAIAASLGADFRWSFDDTVTHYIYQGRVGDNSREYRMVKER
GVHVVSQQWLLACADEQKHVSESLYPFTYNPKMSLNLSQVPESTQRSPSVAHVQPKNLAE
VLGDKSFSGTEEECNKTAQCKGKVEVEEEKEDQDSSEKRDLEQALEMREDLQRQLQAIMS
ATKLTSGRRSSARLTRVGSGGLSSDPSTPDSLGRAGRASRSRALEALRHSRQAVGDMNTE
PSQSEQIVWDDPTAREERARLADNMQWPGSPSQHSEPLTPHEPKAMPNGRGEPSARARES
MTDSELVEMAACDVIDEQMGKCASTLARKDTESSVVTPKTPNTPLSVADPPVSAQPQAQA
LSAVQNENESKAQESEPLRFQLSSLSPQERIDYSHLIEELGGIILDKQCFDPSCSHVIVG
QPLRNEKYLAAMAAGKWILHRSYLEACRAVGHFIQEEDYEWGSSSILDVLPNISSQQRKL
ALAAMRWRQVLQARQGLEGAFSGWTVMLNIDQGREAGFRRLLQSGGAKVFPSPLPSLYKG
TTHLFVDFSRLRAGDFRVDVQEAVAHGAKCLKPEYIADYLMQEPSPPIEMYYLPEAVRYL
QNTTNGGLSTPSRKRKASGDNFLLKKSRFT
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagggggacagtgccatcttcatagtgaagtttgtggaggacagcgagcagaag
aatgagttcaccgagaaggcctataaggccattgtagagttgcagtcagagaaatacctg
cagaccatcactgagaaggaggcactggccctggaccacaatgacaaatccctctatgtt
tttagcaacttctacagccctgctttccaccactgcagaaagctgggatgcagggtagtg
agtccactggtcatattgttctgcctgcagcatcagcgctgtgtgcccaaggcagagcag
cctgtttacaacatggtaatggctgatgtcacagtctcctgcaccagcctggataaagca
atgcgaactgaggtcatggagcttgtgcagctgatgggtgggcgagtttatcgtgacctc
aatgtatctgtgacacacctggtggcaggtgaggtgggcagcaagaagtacctggttgct
gccagcctgggtaaacctatcttgctgcccacctgggtcaaagcttgctgggagaagtcc
cagaacagcctcttccagcactcggagctgcccctggaagagtacttgtgtcctgtgctg
cgtggctgtacagtatgtgtgacgggattgtccagcaccgagcgcaaggaggtgcagcgg
ctctgtgagcagcatggggcccagtatacaggccagctgaagatgaatgagtgcacacac
ctcatcgtcagcgagcctaaaggccagaagtatgaatgcgctcgaaagtggaacgtgtac
tgtgtacccctgcactggttgtttgacagcattgaaaagggcttctgccaagatgagagt
cactactctgtaaagccccatgaccagaagtccagtcggcctcacacctctacccccacg
ggaactgagaggcataaaggcactgctgcctctctgctgggtgtgagccagatttccaac
atcagcttgagctctgtgaatgactcagccttcacaacaacttcagttagccgactggag
actcccgacccactggatgcgctggatatcagttgttgcccagcagatgacttgctggat
ggctgcaagctcttcatatgtggtttatcgggaaagaggatggagaagctgcggcgcctg
gtgaattgcatgggtggcctgcgctttaaccagcccagagaggacctcacccatgttgtc
atgggggaccctgaccaggaccttatcggtttcatttccaaagctgcgcaccggcctcac
gtggtgactgtgcagtggttactggatgttttctcagggggctgccttgtccctgtagaa
ggataccttcatcctgcctgcttgccacctgcatcctctgtgtcaataacagccccccat
ggtccagccacacgacacagtgtgtcgtctgtggctgccgaggaccccagcccttccaag
aacatgcgggcagaagaagagctgctctcccaatacctgggtgcagaccagactgtggct
gaattgcctcggccagttaatgccagcagaaataatagtactttgatcccagagccctta
agccagaaatcaccgcaggactccaccctgcaggacccgaacaatagtggcttatttcag
ggcaagcgcttcttgctggttggctttggtgctgcagcagaggcacagttgtcactattg
gtgacagaaaacggaggcagagtgctggcggtgggcacacgggcagtggccgactatgcc
gtggtgccactgctcggttgcgaggtggaggccaccgtgggagacgtcaccacagatact
tggctggcaatgtgtgtggagcagcagtgtctgctggagctgacatcccacccgttcttt
atgccactgacagtgaaagagggcagtacccctctgcaaggttgtgtactttctgtcagc
cagttcactggggctgagcgtgaatctctcatcgaacttgcccagcatctcggagccagt
gtccaggagtactttgtgcgcacagcaaaccagcgtaaaggtatgctggccagcacccac
ctagtcttgaggaccccagagggcactaagtataatgcagcgcagaagtggggcctgcca
gcagtgaccctacgctgggtacttgagtcagggaagagaggtcaatgtgctgatgagaac
aagttccttgtggaccttccacctttgccagagaaggaggaggaaagttttgtagggggg
tctcaaaaacccactgagacatcccaaacctctccccagatacccctcctggggctgcag
gttagtagtgctatcactcctttggatgtgggacgtttccagagcaaggcattccgctcg
gtgctgggacagaaccaacagcacaaagggcaagggagtgcaacaccagggatggaaggc
agaaatacactccacagggagcagtcactgcagctggacacaccctcccgcttcctctgc
agagaccagctgtttaggccctctttcaatgtcaaggatgctctggctgcactggagacc
cctggggcaaagtctcagcagaaccacagcgctgcaaccccattatcagaagtaattggg
aggaacctgaaggtggcgctggccaacagcacccgcagccacacctctgccttggcagcc
atgacagccagccccaagctgagaatggacacagagcagacgatgaatgtgccacttcct
ttagccggtgtggtcatgtgcgtcagcaagaagttgagcaaaaagcagagtgagctgaat
gccattgccgcctccttgggtgctgacttcagatggtcctttgatgatacagtgacccac
tacatctaccagggtcgtgttggggacaacagtcgggagtaccgcatggtgaaagaacga
ggggtgcatgtggtgtctcagcagtggctcctagcgtgtgcagatgaacaaaaacatgtc
tctgagtctctgtacccctttacttataatcccaaaatgagcttgaacctcagccaggtg
cctgagagcacacagaggtcaccctctgtggctcatgttcagccaaagaaccttgctgaa
gtgttgggggacaagtccttttctggcacagaggaggaatgcaataaaactgctcagtgt
aaaggcaaagtggaagtagaggaggagaaagaggaccaggacagctcagagaagagagac
ttggaacaggccctggagatgagggaggatctgcagaggcagcttcaagcgatcatgtca
gccaccaaactgactagcggaaggcggtcctcagctcggctaaccagggttggatctgga
gggctgagctctgaccccagcacccctgacagcttgggccgtgctgggagagccagcagg
agccgtgctctagaggccctacggcactccaggcaggcagtgggggatatgaacacagaa
ccctcacagagtgagcagattgtgtgggacgaccccacagcccgtgaggaacgagctcgt
ctcgctgacaacatgcagtggcctggaagcccctcccagcactcggagcccctgaccccg
catgagccgaaggccatgccaaatggccgcggggagccctccgctcgtgcgagggagtcc
atgaccgactcggagctggtggagatggcggcctgtgatgtcattgatgaacaaatgggg
aagtgtgcctcgacactcgccaggaaagacacagagtcctctgttgtcacacccaagacg
cccaacacccccttgtccgttgcagacccccctgtctcagcacagcctcaggcacaggcg
ttgtccgctgtgcagaatgagaacgagagcaaggcacaggagtcagagccgctccggttc
cagctgtcctcactcagcccccaggagcgcattgactacagtcacttgatagaggagttg
ggaggaattatccttgacaagcagtgctttgaccccagctgttcccatgtcattgtggga
cagcccctacgcaatgagaagtatttagccgccatggctgcaggaaaatggatcctgcat
cgttcctacttggaggcatgccgtgctgttgggcacttcattcaagaggaagattatgag
tggggtagcagctcaattttggatgttctgcccaatatcagctcacagcagcgcaagctt
gcactggctgccatgagatggaggcaggtcctgcaggcacgtcagggcttggagggagct
ttcagtggttggacggtcatgctgaacatcgaccagggcagagaagcgggtttccggcgg
ctgctgcaatccggtggtgccaaggttttcccaagcccgttgccaagcctgtacaaaggc
actacacacctttttgtggatttcagccgcctgagagcaggtgatttccgggtggatgta
caggaggcggtggcacacggagcaaagtgcctgaaacctgagtacattgccgactacctg
atgcaggagccgtcgcctccaatagagatgtactacctgccggaagcagtgcggtacctg
cagaacaccacgaatggtggcctatcaacaccgtctcgtaagcgcaaagcctctggggat
aacttcctgctgaaaaagtcccggttcacatga
DBGET
integrated database retrieval system
