Scleropages formosus (Asian bonytongue): 108942399
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Entry
108942399 CDS
T04919
Symbol
spg11
Name
(RefSeq) spatacsin isoform X1
KO
K19026
spatacsin
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108942399 (spg11)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
108942399 (spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
108942399
NCBI-ProteinID:
XP_018621261
LinkDB
All DBs
Position
5:complement(27011762..27028462)
Genome browser
AA seq
2423 aa
AA seq
DB search
MSSYVSGVLVVNSGVLSCCQPGVAAERLLTSAPSDMMMSTTEDVGDPRALEVSLLPKTRF
CQRVEDMAKAQLSPKGPWLCCLGSKGRIVLVDAAQGDEALREADGAHADFVWEEAPLPGA
ESPSRLLALGLDGHLRIFELDASSSEDGSLVCSASCSPDFLLRVAEQAEQSGRVPAPQAV
TRLRMLSFAGGTCVVLLNSCVLVQLLWPKGSAEPEASACCVLGVPTEVQATCVDCHICRG
LLFLLTDTGHIYVFGVTGGQLFATVDLPLCHSRLGAAGASPSFHLFQVSQDLSTLVVASG
ANSALAVNLNHYFRTHPEYLEHHTVPARPPLQAPEPADQDRLSSSQHSCSALGLSFQVDR
SWEARLASMYDKARALSRPVQRTNPPWFTHFPHSQFHWAASGAMLSRSQVQGSVAMVRFN
VEDGVTPVALSASEFSAVVTFTTPGNSRTVVVFWDLEKQDVVYHRAEGCSVPVQRGSDEK
LCLLLGDGGLSLVLFSVSQEELLNRLMVFGSAGTVDSLCHLNAWDRCSIPIHALQAGLKN
HQLDTVDFFLKSKENFLCPPAGFCLQEQPSSATQMQLRNVEALCPALDLLASSIKDTHTE
AQSRQFSEQLLNVTLTFLSSRVREILSGVEEPDDNLQQCVSILDRYICELRVFMKRYPWP
VGGAVQLDSSIHRTSTGPQHKWHSLSTEEVIRQAVAANEIPQAQAHLRTLQCPKYKLPLL
RTTGLQLAFQCLTQRDLEQATSLLRNMGFSVKEELKKIFLHTDDGPLRDFVMEELRRLNC
VSEEEGRVVNFIKQVEGLRYTPLTRCKQPVAWKSTLQIEQSEADARQLLQVLRTEPDPQA
TRTLWTSIRADWVQHWDSQTQSAILLSRVQDQALSSCAPDVLWMYLTSLHDCRRITQWIE
SLPAPDCWPPLSADIVNHHTLCSSFLKDEILDMLARRGIFIQAELSDFEQLLWRLGQAGG
VMQDGLPVPQFRSLEGHNFHTCFIHYCLEKGLRYLLYSYTEHYSLTPGNCPALADCALYE
SHPWFEMLVKVQEITRNLSDPEAVFGASLTNAQILTPGSQASVSSMLLEGHSLLALSTIM
FSPGGIDQVVSPRHSKGDPRWKVDLQLLKMALSPYPKLKSALFPQSAPRSSPVSDVSLYH
LLQALRPLDPSKLFRWQSANTLSSGGDASELPHFSCPLLVSQHALVENLHFLYYLCHGRP
SFAFGTFLVQQMIGSVNVELQVADAIERTHRLALQHFHSPAVVAACVCFCEMLGVSSLRL
RVDVAVLSLVLKAWSARAGESNTVALRESLVDWGRRLVEKQAAEELLIHLEAGVRDSVER
KGLARASYEASKEWALVVQFCHLHSLPLSAAYLLDCATDAQWLHFLFFVQLHSYPPEQVR
TLVAQFDSTLRAHLSLAFQSLPPCPALEHEGFFSCPEAEPAHELFQVLLQSQEQQSAWCH
LLAEGLRLHCPTLAVLAACHQEADMIQCLCVWVLTSVDNDVAEEATAHIRENPRHHVWNL
HDLSVMWRTLLKKNNIRPLIRGFQLFQKDCPLIHMMYMFELCFDHKNYQEAKKKVLEFQK
CLLSQKASSVQDEGRIPIQWSECQASVLLLSMLQQCTTQYELRQLLHLLADVDHLLKSNG
PDFKKLSLLSDILQDTPVPLGHTLLESYSPEALQGECSRIVEQLQAHGLFTQARRVSELG
GLPIDTVVINELLQELRGLREKRPWARKGSRIAFWRKCHEQFCNSSVDEETASEFFRCQA
QLSTCAPPETELLCVQERALLFTMAGHWLCRREPVPLGRLEELERKLWECRVRQQELLSA
AEQETMFALPELATGDESFEDILKEFSFSKVAALNRPELLSLDGLPVAESPEPGEGPGAW
PQGRAALARLVGHLLDEGCIHEASRVCRYFSFYHPDLLLVLRCRSLASGDRPRPQDILPS
AASPDTDDLLKRSFASSSSLSSLSSFVVVSHPEDPVVVQLQTVAEECHHGKNYCKQVLSL
YELSKELKCPYSQISAEEPLSVLCKVLLSQQPDRYKKAQAFIAVQGLAPDAVAETVSRAV
VEGLMAAQESGEGGKQIFSLADGREAFLHLARLCGDPNLVGSKLMDHITTVPLGELACTV
ELLILAHDCFSLTCNMEGIGRVLQAARHLSHTHLAHGERYGLLVRLLTGIGRYNEMTYVF
DLLNQNHRFEMLLRKKVESNATLKTALLDYIKRCLPGDSEKHNMVALCFSMCREIGENHE
GAARTQLKLIESQPWAVTPELKSALMKVLTLLKDAAESYSKDSCLRQGLRCVKLAKLVTL
QLHLLNQGQEQQVINLRPGQLLDAIVALPRCYQAFVVAEAYDFSPDWAEVLYQKVVLGGD
FSYLDEFKQPGRLQPALFEDVSKKVSLSKSPGSCSQNLRKLLQHCDDVYTHYKLAYEHKF
FDVANVLLQDSRTGGYLSDRLAS
NT seq
7272 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtatgtgtcaggtgtattggttgttaatagtggtgtgttatcatgttgtcag
cctggtgtggcagcagagagactcctcacctcagccccctcagacatgatgatgtccact
acagaggatgttggagacccccgggcgctggaggtgtccctcctgccgaaaactcgcttc
tgccaacgcgttgaggacatggcgaaggcccagctgtcccccaagggcccctggctgtgc
tgcctggggtcaaagggcaggatcgtcctggtggacgcggcccaaggggacgaggccctc
agggaggcggatggcgctcacgccgactttgtgtgggaagaggcccctctccccggtgcc
gagtccccgtccaggctcctcgcgctgggcctcgacggtcacctgcggatcttcgagctg
gacgcttcctccagtgaggatgggtcccttgtctgctcagccagctgctccccggatttt
ttgctgcgggtggctgagcaggcggagcagagcggccgggtgccggcgcctcaagctgtg
actcggctccggatgctctccttcgccgggggaacctgcgtcgtcctcctcaactcctgc
gttctggtacagctactgtggcccaaggggtcagcggagccagaggccagcgcttgctgt
gtcctgggtgttcccacggaagtccaggccacatgtgtggactgccacatctgcagaggt
ctgctcttcctgctgacagacactggacacatatatgtgtttggcgttactggtgggcaa
ctctttgccacggtggatttgcccttgtgccactccagactgggtgctgctggggcaagt
ccctcgtttcacctcttccaggtgtcacaggacctcagcactcttgtggtggcttctggt
gccaattcagccctggcagtcaatctcaatcattacttcaggacacaccccgaatacctg
gagcaccacactgtgccggctcgacctcctttacaggcgccggagcccgctgaccaggac
aggctctccagctctcagcacagctgttccgcgctggggctttccttccaagtggaccgt
tcctgggaagcccggctggcctcgatgtacgacaaggcccgagccctgagccgccctgtc
cagcgcaccaatcccccctggtttactcacttcccgcattcacagtttcattgggccgca
tcaggggccatgctgtccaggagccaggtgcaagggagcgttgccatggtgcgtttcaac
gtggaagacggggtgacccccgtggcactttccgcctctgagttttcagcggtcgtgacc
ttcacgacccctgggaacagcaggacggtggtggtcttctgggaccttgagaaacaggat
gtggtctaccaccgggcggagggctgcagcgtgccagtacagcgaggcagcgacgagaag
ctctgcctgcttcttggagacggcggcctctccctcgtcctcttcagcgtctcccaggaa
gagctgctcaacaggctcatggtttttggtagcgcgggaacagtggactctctgtgtcac
ctcaacgcctgggaccgctgctccatcccaatccatgccctgcaggcgggactgaagaac
catcagctggacactgtggacttcttcctaaagagcaaggagaacttcttatgtccacct
gcgggattctgcctgcaggagcagccctccagtgccacgcagatgcagctgcgaaacgtc
gaggctctatgtcctgctctggacctgctcgcctcctccatcaaggacacacacacagaa
gcccagagccggcagttctcagagcagctgctcaatgtcactctgactttcctgagctcg
cgggtgcgagagatcctctcgggggtggaggagccagacgacaatctgcagcagtgtgtg
tccatcctggaccggtacatctgtgagctgcgtgttttcatgaagaggtacccctggcca
gtagggggtgctgtccagctagactccagcatacaccgaacaagcactggtccccaacat
aaatggcattccctctctacagaggaagtgattcgacaggcagtggcagccaatgagatc
ccacaggcccaggcccacttgagaactctgcagtgtcccaagtacaagctccccctgctg
aggaccacgggacttcagctggcctttcagtgtctgacccagcgggacctggagcaggcc
acaagcctgctgaggaacatgggcttcagcgtgaaggaggagttaaagaagatctttctc
catactgacgacggccccctgcgggacttcgtgatggaggagttaagaaggctgaactgc
gtgtcggaggaggagggtcgagtggtgaacttcatcaaacaggtggaagggctgcgctac
actcctctgactcgatgtaaacagccggtggcctggaagagcacattgcagatagagcag
tcggaggctgatgccaggcagctgctgcaggtgctgaggacggagcctgatccacaagcc
actcggacgctgtggacctccatcagggcggactgggtgcaacactgggattcccagacc
cagagcgccattttgctttcccgtgtacaggaccaagctctaagttcctgtgctccggac
gtcctgtggatgtacctgacctccctccacgactgtcggaggatcacccaatggattgag
agcctgcctgcccctgactgttggccgccgctcagcgctgacattgttaaccaccacacc
ctgtgcagcagcttcctgaaggatgaaatcctggacatgctggcaaggagggggattttc
atccaagccgagctgtctgacttcgagcagctgctgtggaggctcggccaggcaggaggg
gtgatgcaggatggcctcccggtgccacagttccgatcccttgagggccacaacttccac
acctgcttcattcactactgtctggaaaagggcctgagatacctgctgtacagctacaca
gagcactacagtttaaccccaggaaactgccccgccctggcggactgtgctctctacgaa
agccacccctggtttgagatgctggtgaaggtccaggagatcacaaggaacctgtcagac
ccggaggcggtcttcggcgccagcctgaccaatgctcagatcctgaccccgggcagccag
gccagcgtgagcagcatgctcctggagggacacagcctgcttgcgctctccaccatcatg
ttttccccagggggcattgaccaggtggtgagtccaaggcacagcaagggagatcctcgg
tggaaggtcgatctccagctcctgaagatggcgctcagtccgtatcccaagctcaaatcc
gctctcttcccccagagcgccccccgcagctcgcctgtttccgatgtgtctctctaccac
ctcctgcaggcactgcgccccctggatccttccaaactgttccgctggcagtctgcaaac
acattgagcagcggcggagatgcatcagaactgcctcacttctcctgccccctgctagtc
agccagcatgcccttgtggagaacctgcacttcctgtactacctgtgccacggccggccc
tccttcgccttcggcaccttcctggtgcagcagatgatcggctcagtcaacgtggagctg
caggtggcggatgccatcgagcgcacccaccgcctcgccctgcagcacttccactcccca
gctgtggtcgccgcctgcgtctgcttctgcgagatgctgggggtcagcagcctgcggctc
cgggtggacgtggctgtgctcagcctggtgctcaaagcctggagtgcgagggcaggggag
agcaacacagttgccctccgggagtccctggtggactggggccggcggctggtggagaaa
caggccgcagaagagctgcttatccacctggaggccggagtccgagacagcgtggagagg
aaaggattggccagggcgtcctatgaggcgtcgaaggaatgggcgctggtagtgcagttc
tgccacctgcactcactgcccctgagtgccgcctacctacttgactgcgccacagacgca
caatggctgcacttcctgttcttcgtccagctgcacagctaccctcctgagcaggtgcgc
accctggtggcccagtttgactcgacgctgcgggcccacctctccctggccttccagagc
cttccgccatgccccgctctggagcacgaggggtttttctcctgccccgaggctgaaccc
gcacacgagcttttccaggtgctgcttcagagtcaggagcagcagagtgcctggtgccac
ctgctggctgaaggactgcgcctgcactgccccacgctggccgtgttggcagcttgtcac
caggaagctgatatgatccaatgtctgtgtgtctgggtcctcacctcggtggacaacgac
gttgccgaagaggccacggcccacatccgtgagaatccgagacaccacgtgtggaacctc
catgacctatctgtcatgtggagaactctgctgaagaaaaacaacatcaggcccctgatt
cgaggcttccagctctttcagaaggactgccctctaatccacatgatgtacatgtttgag
ctctgcttcgatcacaaaaactaccaggaggccaagaagaaagttctggagttccagaaa
tgcctgttgagtcagaaggcaagttctgtccaggacgaggggcgcatccccatacagtgg
tccgagtgccaggcctcagtcctgctgctctccatgctccagcagtgcaccacccagtat
gagctgcggcaactgctgcacctgcttgccgacgtggaccaccttctcaagtccaacggc
cccgactttaagaaactgagcctgctgagcgacatcctgcaagacacccccgtgcccctc
ggccacaccctgctggagagctattcccccgaggccctgcagggggagtgctcacgcata
gtggaacagctgcaggcccacgggctctttacccaggccaggcgggtatctgagctgggg
ggtttgcccatcgacactgtggtcatcaatgagttgttgcaggagctgcggggccttcga
gagaagcgcccgtgggctaggaaggggagcaggatcgctttctggaggaagtgccacgag
cagttctgcaacagctccgtggacgaggaaactgcctcggagttcttccggtgccaggcc
cagctgtccacgtgtgcgccgccggagaccgagctcctgtgcgtccaggaaagggcgctg
cttttcaccatggcgggacattggctgtgtcggcgggagccggtgcccctcggccggctg
gaggagctggagaggaagttatgggagtgccgtgtgcggcaacaggagctgctctccgcc
gcggaacaagagactatgtttgcacttcctgaactggcgacgggggatgagtcctttgag
gacatcctcaaggagttctccttctccaaggtggctgctctcaaccggccggagctcctg
agtctggacgggctgcctgtagccgagagccctgagcccggcgagggacccggcgcctgg
ccccagggaagggcagccctagccaggctggtgggccacctgctggacgagggctgcatc
cacgaagccagccgtgtgtgccgctacttctccttctaccaccctgacttgttgctggtg
ctgcgctgccgctccctggcgagcggggacaggccccgcccccaagatatcctgccttct
gccgcatctccagacactgacgacctcctgaagaggagcttcgccagctcctccagtttg
agcagcctgtcctcattcgtggtggtgtcccatcctgaggaccctgtggtggtccagctg
cagacggtggctgaggaatgccaccacggcaagaactactgcaagcaggttctcagcctc
tacgagctttccaaggagctcaagtgcccgtacagccagatctctgccgaggagccgctc
tctgtgctctgtaaggtgctgctatcccagcaacccgaccgctacaagaaggcccaagcg
ttcattgctgtgcagggtcttgcgcccgacgctgtggccgagacggtgtccagggctgtg
gttgagggtttgatggctgcccaggagagtggagaaggagggaagcagatcttcagcctg
gctgatgggagggaagctttcctgcacctggccaggctctgcggagaccccaacctggtg
ggcagcaagctgatggaccacatcaccacggtgcccctgggggagctggcttgcactgtg
gaactgctcatccttgcccacgactgtttcagcctcacctgtaatatggagggaattggg
cgtgtgctccaggctgcccgtcaccttagtcacacccacctggcccacggcgagcgctac
ggcctgctggtgcggctcctcaccggcatcggcaggtacaatgagatgacctacgtgttc
gacctgctgaaccagaaccaccgtttcgagatgcttctgaggaagaaggtggagtcgaac
gcaacactcaagacggccttgctcgattacatcaagcgctgcctgcctggtgacagcgag
aagcacaacatggtggcgctgtgcttcagcatgtgccgcgagattggcgagaaccatgag
ggtgccgcgcgtactcagctcaagctcatcgagtcgcagccttgggcagtgacaccggag
ctgaaaagcgccttgatgaaggtcctgacgctgctcaaggacgctgcagagagctattcc
aaggactcatgtttgcgccaggggctccgctgtgtgaagctggccaagctggtgacgctg
cagctgcacttgctgaaccagggtcaggagcagcaagtgatcaacttgcgccccgggcag
ctgctggacgccatcgtagctctgccccgttgctaccaggcgttcgtggttgccgaggcg
tacgacttcagccccgactgggccgaggtgctgtatcagaaggtcgtgctagggggggac
ttctcgtatctggatgagttcaaacagcccggccgcctgcagcccgccctctttgaggac
gtgtctaagaaggtgtccctctccaagtcgcccggcagctgcagccagaacctgcgaaag
ttgctgcagcactgtgacgacgtctacacccattacaagttggcctacgagcacaagttc
tttgatgtggccaacgtgctgctgcaggactcgaggacgggcggttacctgagcgaccgg
ctggccagctga
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integrated database retrieval system
