Scleropages formosus (Asian bonytongue): 114909763
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Entry
114909763 CDS
T04919
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04510
Focal adhesion
sfm04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114909763
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114909763
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfm00536
]
114909763
Glycosaminoglycan binding proteins [BR:
sfm00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
114909763
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWC
Motif
Other DBs
NCBI-GeneID:
114909763
NCBI-ProteinID:
XP_029105389
LinkDB
All DBs
Position
Unknown
AA seq
1090 aa
AA seq
DB search
MFISVDSRTVLLLCLVAAARCQQEDDQAEGGCVQDDRHYNDKDVWKPEPCHICVCDTGTI
LCDEIICEELKGCPNPEIPFGECCPICPAEQAPPSGQVGVKGQKGEPGDIIDIVGPRGPA
GPMGPPGEQGPRGERGEKGEKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLSGNFAAQ
MAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGTAGPIGPR
GPPGPPGKPGEDGEAGKPGKAGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDGAKGES
GAAGAKGEAGSSGENGAPGPMGPRGLPGERGRPGPPGSAGARGNDGSPGPAGPPGPVGPA
GAPGFPGSPGAKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGPSGNPGTDGIPGAKGSV
GAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGEQGPAGLQGPL
GPAGEEGKRGPRGEPGAAGPIGPPGERGAPGNRGFPGQDGVAGPKGAPGERGPQGVSGPK
GATGDPGRPGEPGLPGARGLTGRSGDSGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVM
GFPGPKGATGEPGKPGEKGLAGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGQPGPS
GFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGSAGPQGLQGPRGLP
GTPGTDGPKGAIGPGGPPGAQGPPGLQGMPGERGPSGIPGPKGDRGDNGEKGPEGAPGKD
GSRGLTGPIGPPGPGGPNGEKGESGPAGPPGAPGTRGAPGDRGETGPPGPAGFAGPPGAD
GQPGAKGDQGEVGQKGDGWSTWPPGPSGAPGPQGPTGVSGPKGARGAQGPPVSATGFPGA
AGRVGPPGPNGNPGPAGPAGPPGKDGPKGVRGDGGPPGRQGDPGLRGPAGTPGEKGEPGE
DGPPGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGTAGDRGPPGP
VGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGAPGXPRSVGP
TGKQGDRGEA
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgttcatctcggtggattccaggactgtactgctcctctgcctcgtggccgcggccaga
tgtcagcaggaggacgaccaggcggaagggggctgcgtgcaggatgaccggcactataac
gacaaggacgtgtggaagccagagccctgtcacatttgtgtgtgcgacactgggaccatc
ctgtgtgacgaaattatctgcgaggagctaaaaggctgcccaaaccccgagatcccattc
ggagagtgttgccccatctgcccggctgagcaggcccctcccagtggacaagttggtgtt
aagggacagaagggagaaccaggagatatcattgatattgtaggaccaagaggaccagca
ggccccatggggcccccaggagagcagggaccacgtggcgagcgaggggagaagggagag
aagggaagtcctggcccccgtggcagagatggcgagcctggtacccctgggaacccgggc
ccccctggccctcctgggccaaatggtccccctgggcttagcgggaatttcgcagctcag
atggctggtggctttgacgagaaggctggaggtgctcagatgggcgtgatgcaaggaccg
atgggccctatgggtccaagaggaccaccgggccccactggagcccctggccctcaaggt
ttccaaggcaaccccggagagcctggagagcctggcactgcaggccccataggtccccgc
gggccgcctggacctccaggaaaacctggtgaggatggtgaagctggcaagcctgggaaa
gctggtgatcgtggaccctctgggcctcagggagctcgtggattcccaggaaccccaggt
ctgcctggaatcaaaggacacagaggttacccgggtcttgatggtgcaaaaggagaaagt
ggagctgcaggagctaagggtgaggcaggttcttctggtgagaacggcgcgcccggaccg
atgggcccccgtggtcttccgggtgagaggggccgacccggacctcccgggtctgctggt
gctcgtggaaacgatggctctccaggccccgctggcccccctgggcctgttggtccagct
ggtgctccaggcttccctggttccccaggtgccaagggtgaagctggtcccacgggtgct
cgtggacctgagggagcccagggaccccgcggcgaatccggaacgccaggatctcccgga
ccttctggtccttctggtaaccctggtaccgacggtatccctggagccaagggatctgtt
ggagctcctggtattgctggcgctcctggcttcccaggaccccgtggaccccctggacct
cagggagccacgggacctctagggcccaaagggcagtcgggtgaccctggtattccaggg
ttcaagggtgaagcaggtcccaaaggagagcaaggccccgctggacttcagggtcctctt
ggcccagcaggagaggagggcaagaggggacccagaggagagcctggtgctgcgggccca
attggacctcctggcgagagaggcgctcccggtaaccgtggtttcccaggtcaggatggt
gtggctggtcccaagggtgcccctggtgagcgtggacctcagggtgtgtctggacccaag
ggtgccacaggtgacccaggccgccctggagagcctggtctgcctggagcaaggggtctt
accggtcgctctggtgattctggtcctcaaggcaaagttggcccatcaggtgctcctggt
gaggatggccgccctggacctcctggtccccaaggagcacgcggtcaacctggtgtgatg
ggcttccctgggcccaagggagccaccggtgagcctggcaaaccaggggagaaaggactg
gctggtgctccaggtctcagaggtctgcctgggaaagatggtgagaccggtgctgccggc
ccccctggcccagctggacctgccggagagagaggagaacaaggtcagcctggaccctct
gggttccagggtcttcctggacctcctggcccccctggtgagggaggcaagcctggtgac
cagggtgttcctggagaggctggggctgctggtgcaactggacccagaggtgagcgtggt
ttccctggagagagaggaagcgctggacctcaaggcttacaggggcctcgcgggctgccc
ggaactcctggaactgatggaccgaagggagccattgggccaggcggccccccgggtgct
cagggacctcctggccttcagggcatgcctggcgaaagaggaccttctggtattcctgga
cctaagggtgacagaggtgacaacggtgagaaaggacctgagggcgcgcctggaaaagat
ggctccagagggttaaccggcccaattggtcctcctggtccaggtggtcccaacggtgag
aagggtgaatccggacctgctggtccccctggagctcctggtactcgcggtgcacctggt
gaccgtggtgagactggtccccctgggcctgctggctttgctggtcctcctggtgcagat
ggtcagcctggagctaagggagatcaaggtgaggttggacagaagggtgatggctggagc
acctggcccccgggaccttctggagccccagggccacagggtcccacaggtgtatctgga
cccaaaggtgcccgtggtgcacaaggaccccctgtgagtgcaaccggattccctggtgca
gcaggcagagtcggaccccctggtcccaacggtaatcctggtcctgctggccctgctggt
cctcctggaaaagatggccccaagggtgtccgtggtgatggtggccccccaggtagacag
ggagaccctgggcttcgaggtcctgctggcacacctggagagaaaggagagcctggagag
gatggaccccctggtccagatggtccctctggcccacagggtctggctggacagcgtggt
attgttggtctgcctggacagcgtggtgagagaggtttccctggccttcctggtccctct
ggtgaacctggcaagcaaggtgctccgggtacagcaggtgaccgtggaccccctgggcct
gtgggaccccctggattgactggtcctgctggagagcctggaagagaaggcaaccctggg
tctgatgggcccccaggtagagatggtgccactggaatcaagggtgaccgaggtaacact
ggtcctgctggtgctccaggagccccaggtgcacctgganngcccaggtccgtgggtccc
actggcaagcagggagacagaggagaggct
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