Shigella flexneri 2003036: SFy_0069
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Entry
SFy_0069 CDS
T03267
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sfn
Shigella flexneri 2003036
Brite
KEGG Orthology (KO) [BR:
sfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfn03021
]
SFy_0069
Transcription machinery [BR:
sfn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
SFy_0069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_RapA
Tudor_1_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AIL34000
LinkDB
All DBs
Position
complement(57771..60677)
Genome browser
AA seq
968 aa
AA seq
DB search
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDT
ITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQI
DRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVG
LGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQH
DAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE
QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLL
AGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRN
TRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGD
NATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI
IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRI
GQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQT
EGFDDLIKSCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAM
NLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWE
HPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTP
VRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSAR
ALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDAL
RLIVVTHQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgccttttacacttggtcaacgctggatcagcgatacagaaagcgaattgggacttgga
accgttgtcgcggtggatgcgcgaactgtcactttacttttcccatctactggtgaaaac
cgtctgtacgcacgcagtgattcccccgtgacccgcgtgatgttcaaccctggtgatacc
attaccagccatgacggctggcagatgcaagtcgaagaagtaaaagaagaaaatggcttg
ctgacctatatcggtactcgcctggatactgaagagtccggcgtagccctgcgtgaagtt
ttccttgatagcaaactggtgttcagcaaaccgcaggaccgtctgtttgccgggcagatt
gaccgtatggaccgctttgcgctgcgttatcgcgcgcgtaagtattccagcgaacagttc
cgtatgccgtacagcggcctgcgcggtcagcgtaccagcctgatcccgcatcagctcaac
atcgctcatgatgttggtcgccgccacgcgccgcgcgtcctgctggctgacgaagtgggt
ttagggaaaaccattgaagccgggatgatcctgcatcagcaactgctctctggcgctgct
gaacgtgtgctgattatcgtcccggaaaccttacagcatcagtggctggtagaaatgctg
cgccgtttcaacctgcgctttgctctgtttgatgatgagcgttatgccgaagctcagcac
gatgcttacaacccgtttgacaccgaacagctggtgatttgctcgctggattttgcccgt
cgtagcaaacagcgcttggaacatctctgtgaagccgaatgggacctgctggtggtcgat
gaagcgcatcacctggtgtggagcgaagatgcgccaagccgtgaatatcaggccattgaa
caactggcagagcacgtgccgggcgttctgctgctgaccgcgaccccggaacagctgggg
atggaaagccacttcgcccgtctgcgtctgctggacccgaaccgtttccacgattttgcg
cagttcgttgaagagcagaaaaattatcgtccggttgcggacgccgttgccatgctgctg
gcaggtaacaaactgagcaatgacgaactgaacatgctcggcgagatgatcggcgagcag
gatatcgagccgctgttgcaggcagcaaacagcgacagcgaagatgcccagagcgcccgt
caggagctggtttcgatgctgatggatcgccacggcaccagccgcgtgctgttccgtaac
acgcgtaacggtgtgaaaggattcccgaaacgcgagctgcacaccattaagctgccgcta
ccgacgcagtatcagacggctattaaagtctccggcattatgggcgcacgtaaaagtgcg
gaagatcgtgctcgcgatatgctctacccggagcgtatttatcaggaatttgaaggtgat
aacgccacctggtggaacttcgatccgcgcgttgagtggctgatgggctacctgaccagc
catcgctctcagaaagtgctggtgatctgcgccaaagctgccactgcgctgcaactggag
caggtactgcgcgaacgtgaaggtattcgcgctgcggtgttccacgaaggtatgtcgatt
atcgaacgtgaccgcgctgccgcctggtttgccgaagaagacaccggcgcacaggtactg
ctgtgctcagaaatcggttctgaaggacgtaactttcagttcgccagtcacatggtgatg
tttgacctgccattcaacccggatctactggagcagcgtattggtcgtctggatcgtatc
ggccaggcgcacgatattcagatccatgtgccttatctggagaaaaccgctcagtcggtg
ctggtgcgctggtatcacgaaggtctggatgcatttgagcacacctgcccgaccggacgc
actatttacgatagcgtatacaacgatctgattaactatctggcttcaccggatcaaacc
gaaggctttgacgatctgatcaaaagctgccgcgagcaacatgaagcgctgaaagcacag
ctggaacagggtcgtgaccgcctgctggaaatccactccaacggtggcgaaaaagcccag
gcactggcagaaagcattgaagagcaggatgacgataccaacctgatcgccttcgccatg
aacctgttcgatattatcggtatcaatcaggacgatcgcggcgacaacatgatcgtgctg
acgccgtccgatcatatgctggtgccggacttccctggcctgtcggaagatggcatcacc
atcacctttgatcgtgaagtggcgctggcgcgtgaagatgcacagtttattacctgggag
catccgctgatccgcaacggtctggatctgatcctttctggcgataccggtagcagcacg
atttcactgttaaaaaacaaagcgttgccggtaggtacgctgttggtggaactgatttat
gtggttgaagcccaggctccgaagcagttgcagctcaaccgcttcctgccaccgacgccg
gtacgtatgctgctggataaaaacggcaacaacctggcggcgcaggtagagtttgaaacc
tttaaccgccagcttaacgcggttaaccgtcacaccggcagcaaactggttaacgccgtg
cagcaggatgttcacgctatccttcaactgggtgaagcgcagatcgagaaatctgcccgt
gcattgattgatgcagcgcgtaacgaagccgacgaaaaactgtctgccgagctgtctcgt
ctggaagctctgcgtgcagtgaacccgaacattcgtgacgacgaactgaccgccattgag
agcaaccgtcagcaggtaatggaaagcctggatcaggcaggttggcgtctggatgccctg
cgtttgatcgttgtaacgcatcagtaa
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