Shigella flexneri 2003036: SFy_2955
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Entry
SFy_2955 CDS
T03267
Name
(GenBank) SbcB
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sfn
Shigella flexneri 2003036
Pathway
sfn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
SFy_2955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfn03400
]
SFy_2955
Enzymes [BR:
sfn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
SFy_2955
DNA repair and recombination proteins [BR:
sfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
SFy_2955
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SFy_2955
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SFy_2955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AIL36273
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All DBs
Position
2106332..2107756
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AA seq
474 aa
AA seq
DB search
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPRP
GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFY
DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLAHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMADLAGDISPLLELDIDTLRERLYTAKADLGDNAAVPVKLV
HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD
NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY
AEQQRWLEHRHQVFTPEFLQGYADELQMLVQQYADDKEKVALLKALWQYAEEIV
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgacagacacagataaacaacctaccttcctctttcacgattacgaaacctttggcacg
caccccgcgttagatcgccctgcacagttcgcagccattcgcaccgatgacgaattcaat
gtcatcggcgaacccgaagtcttttactgcaagcccgcggatgactatttaccccggcct
ggagcagtattaattaccggtattaccccgcaggaggcacgggcgaaaggagaaaacgaa
gccgcgtttgccgcccgtattcactcgctttttaccgtaccgaagacctgtattctgggc
tacaacaatgtgcgtttcgacgacgaagtcacacgcaacgttttttatcgtaatttctac
gatccttacgcctggagctggcagcatgataactcgcgctgggatttactggatgttatg
cgtgcctgttatgccctgcgcccggaaggaataaactggcctgaaaatgatgacggtcta
ccgagctttcgccttgagcatttaaccaaagcgaatggtattgaacatagcaacgcccac
gatgcgatggctgatgtgtacgccactattgcgatggcgaaactggtaaaaacgcgtcag
ccacgcctgtttgattatctctttacccatcgtaataaacacaaactgatggcgttgatt
gatgttccgcagatgaaacccctggctcacgtttccggaatgtttggggcatggcgtggc
aataccagctgggtggcaccgctggcgtggcatcctgaaaatcgcaatgccgtaattatg
gcggatttggcaggagacatttcgccattactggagctggatatcgacacattgcgcgag
cgtttatataccgcaaaagccgatcttggcgataacgccgccgttccggttaagctggtg
catatcaataaatgtccggtactggcccaggcgaatacgctacgcccggaagatgccgac
cgactgggaattaatcgtcagcattgcctcgataacctaaaaattctgcgtgaaaatccg
caagtgcgtgaaaaagtggtagcgatattcgcggaagccgaaccgtttacaccttcagat
aatgtggatgcacagctttataatggctttttcagtgacgccgatcgtgcagcaatgaaa
attgtgctggaaaccgagccgcgtaatttaccggcactggatatcacttttgttgataaa
cgaattgaaaagttgttgttcaattatcgggcacgcaacttcccggggacgctggattat
gccgagcagcaacgctggctggagcaccgccaccaggtcttcacgccagagtttttgcag
ggttatgctgatgaattgcagatgctggtacaacaatatgccgatgacaaagagaaagtg
gcgctgttaaaagcactttggcagtacgcggaagagatcgtctaa
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