Shigella flexneri 2003036: SFy_4695
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Entry
SFy_4695 CDS
T03267
Name
(GenBank) YhdA
KO
K18765
RNase E specificity factor CsrD
Organism
sfn
Shigella flexneri 2003036
Brite
KEGG Orthology (KO) [BR:
sfn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfn03019
]
SFy_4695
Messenger RNA biogenesis [BR:
sfn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SFy_4695
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
GDPD
Motif
Other DBs
NCBI-ProteinID:
AIL37594
LinkDB
All DBs
Position
complement(3388113..3390053)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQAVATAIDTHLVSNDFSA
LRPQITELMVSADIVRVDLLHGDKQVYTLARNGSYRPVGTSDLFRELSVPLIKHPGMSLR
LVYQDPMGNYFHSLMTTAPLTGAIGFIILMLFLAVRWLQRQLAGQELLETRATRILNGER
GSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDTLIRSYAAQDVKTGLNNRLFFDN
QLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHSQVEEQFFTLTNLLSTFMMRYPGAL
LARYHRSDFAALLPHRTLKEAESIASQLIKAVDTLPNNKMLDRDDMIHIGICAWRSGQDT
EQVMEHAESATRNAGLQGGNSWAIYDDSLPEKGRGNVRWRTLIEQMLSRGGPRLYQKPAV
TREGQVHHRELMCRIFDGNEEVSSAEYMPMVLQFGLSEEYDRLQISRLIPLLRYWPEENL
AIQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVNQAGLTLVSTSWIKELNVELLKLHPGLVRNIEKRTENQLLVQSLVEACSGTSTHV
YATGVRSRSEWQTLIQRGVTGGQGDFFASSQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgagattaacgacgaaattttcggcctttgttacgctgctcaccgggttaacaattttt
gtgactttgctgggctgttcgctaagtttctacaacgccattcagtataagtttagtcat
cgcgttcaggcggtggcgacggcgattgatacccaccttgtgtcgaatgacttcagcgca
ttaaggccacaaattaccgaattaatggtgtcagcagatatcgttcgtgtagacctgctg
catggtgataaacaggtttataccctggccagaaatggtagttatcgtccggttggcacc
agcgatctgtttcgtgaactgagcgttccgttgataaagcatccggggatgtcgttgcgt
ctggtttatcaggatccgatgggcaactatttccattcgttgatgaccaccgcgccgctc
acgggggcgattggctttatcattcttatgctctttctggcggtacgctggttacaacgg
caacttgccgggcaagaattgctggaaacccgggctactcgtatcttaaacggtgagcgt
ggctctaatgtgttgggaaccatctatgaatggccgcccagaaccagcagtgcgctggat
acgctgcttcgtgaaattcagaacgcacgcgaacaacacagccgtcttgatacgctgatc
cgctcttatgccgcacaggacgtgaaaaccggcctcaataaccgactctttttcgataat
cagttagcaacgttactggaagatcaggagaaagtaggtacccacgggatcgtgatgatg
attcgtctgccggatttcaatatgttgagcgatacctgggggcacagccaggttgaagaa
cagttcttcactctgacgaatctgctgtcgacatttatgatgcgctaccctggcgcactg
ctggcgcgttaccaccgcagtgattttgctgcgctgttaccgcaccggacgttaaaagag
gcagagagcatagccagtcagttaatcaaagccgtcgataccttgccgaacaataaaatg
ctcgatcgcgacgatatgatccacattggtatctgtgcctggcgtagtggtcaggatacc
gagcaggtaatggaacatgcagagtctgccacgcgtaatgcgggattgcagggtggcaat
agctgggctatttatgatgactcgttgcctgaaaaaggacgcggtaatgttcgctggcgt
acgcttatcgagcaaatgctcagtcgcggcggcccgcgcctttatcaaaaaccggcggtt
actcgcgaaggtcaggttcatcatcgcgaactcatgtgccgcatcttcgatggtaatgaa
gaggttagctcggcggagtatatgccgatggtcttgcagtttggcttatcggaagagtat
gaccgtctgcaaatcagccgtcttattccactattgcgttactggccagaggaaaatctg
gcgattcaggttaccgttgagtcgctgattcgtccgcgttttcagcgttggctgcgcgat
acgttaatgcaatgtgaaaaatcacaacgaaaacgcataattattgaacttgcagaggcc
gatgtaggtcaacatatcagtcgtttacaacctgttattcgtttagtgaatgctttaggg
gtacgggtagccgtcaaccaggctggtttgacgctggtaagcaccagttggatcaaagaa
cttaatgttgagttactcaagctccatccggggctggtcaggaacattgagaagcgaacg
gagaaccagctgctggttcaaagcctggtggaagcctgctccgggaccagcacccacgtt
tacgccaccggcgtgcgttcgcgaagcgagtggcagaccctgattcagcgcggtgttaca
ggcgggcaaggggattttttcgcgtcctcacagccacttgatactaacgtgaaaaaatat
tcacaaagatactcggtttaa
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