Shigella flexneri 2003036: SFy_5816
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Entry
SFy_5816 CDS
T03267
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfn
Shigella flexneri 2003036
Pathway
sfn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SFy_5816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfn03021
]
SFy_5816
03400 DNA repair and recombination proteins [BR:
sfn03400
]
SFy_5816
Enzymes [BR:
sfn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SFy_5816
Transcription machinery [BR:
sfn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SFy_5816
DNA repair and recombination proteins [BR:
sfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SFy_5816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AIL38428
LinkDB
All DBs
Position
4193770..4197993
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG
LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVL
GRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKL
SNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEAPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttattaaagtttctgaaagcgcagactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaaccagaacgtgacggccttttctgcgcccgt
atctttgggccggtaaaagattacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgtggcgtcatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgaactggcttccccgactgcgcacatctggttcctgaaatcgctg
ccgtcccgtatcggtctgctgctcgatatgccgctgcgcgatatcgaacgcgtactgtac
tttgaatcctatgtggttatcgaaggcggtatgaccaacctggaacgtcagcagatcctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgcgaagatg
ggtgcggaagcaatccaggctctgctgaagagcatggatctggagcaagagtgcgaacag
ctgcgtgaagagctgaacgaaaccaactccgaaaccaagcgtaaaaagctgaccaagcgt
atcaaactgctggaagcgttcgttcagtctggtaacaaaccagagtggatgatcctgacc
gttctgccggtactgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gcgacttctgacctgaacgatctgtatcgtcgcgtcattaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggacatcatcgtacgtaacgaaaaacgtatgctgcag
gaagcggtagacgccctgctggataacggtcgtcgcggtcgtgcgatcaccggttctaac
aagcgtcctctgaaatctttggccgacatgatcaaaggtaaacagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgtaatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcgctggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggtcttgctaccaccattaaagctgcgaagaaaatg
gttgagcgcgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccgactctgcaccgtctgggtatccaggcatttgaaccggta
ctgatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcatataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctggaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaaccaatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagcagaacgtctgtatcgctctggt
ctggcttctctgcatgcgcgcgttaaagtgcgtatcaccgagtatgaaaaagatgctaac
ggtgaattagtagcgaaaaccagcctgaaagacacgactgttggccgtgccattctgtgg
atgattgtaccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaaaaaagca
atctccaaaatgctgaacacctgctaccgcattctcggtctgaaaccgaccgttattttt
gcggaccagatcatgtacaccggcttcgcctatgcagcgcgttctggtgcatctgttggc
atcgatgacatggtcatcccggagaagaaacacgaaatcatctccgaggcagaagcagaa
gttgctgaaattcaggagcagttccagtctggtctggtaactgcgggcgaacgctacaac
aaagttatcgatatctgggctgcggcgaacgatcgtgtatccaaagcgatgatggataac
ctgcaaactgaaaccgttattaaccgtgacggtcaggaagagaagcaggtttccttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcggcacagattcgtcagctt
gctggtatgcgtggtctgatggcaaagccggatggctccatcatcgaaacgccaatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaactgcgaactccggttacctgactcgtcgtctg
gttgacgtggcgcaggacctggtggttaccgaagacgattgtggtacccatgaaggtatc
atgatgactccggttatcgaggggggtgacgttaaagagccgctgcgcgatcgcgtactg
ggtcgtgtaactgctgaagacgttctgaagccgggtactgctgatattctcgttccgcgc
aacacgctgctgcacgaacagtggtgtgacctgctggaagagaactctgtcgacgcggta
aaagtacgttctgttgtatcttgtgacaccgactttggtgtatgtgcgcactgctacggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagcaatcggtgttatcgcggca
cagtccatcggtgaaccgggtacacagctgaccatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatcaagctc
agcaacgtgaagtcggttgtgaactccagcggtaaactggttatcacttcccgtaacacc
gaactgaaactgatcgacgaattcggtcgtaccaaagaaagctacaaagtgccttacggt
gcggtactggcgaaaggcgatggcgaacaggttgctggcggcgaaaccgttgcaaactgg
gacccgcacaccatgccggttatcaccgaagtaagcggttttgtacgctttactgacatg
atcgacggccagaccattactcgtcagaccgacgaactgaccggtctgtcttcgctggtg
gttctggattccgcagaacgtaccgcaggtggtaaagatctgcgtccggcactgaaaatc
gttgatgctcagggtaacgacgttctgatcccaggtaccgatatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcagctggaagatggcgtacagatcagctctggtgacacc
ttggcgcgtattccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggacctgttcgaagctcgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtatcgtttccttcggtaaagaaaccaaaggtaaacgtcgtctggttatcaccccggta
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtaatttccgacggtccggaagcgccgcacgacatt
ctgcgtctgcgtggtgttcatgctgtgactcgttacatcgttaacgaagtacaggacgta
taccgtctgcagggcgtaaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagctaccatcgttaacgcgggcagctccgacttcctggaaggcgaacaggtt
gaatactctcgcgtcaagatcgcaaaccgcgaactggaagcgaacggcaaagtgggtgca
acttactcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtccttcatc
tccgcggcatcgttccaggagaccactcgcgtgctgaccgaagcagccgttgcgggcaaa
cgcgacgaactgcgcggcctgaaagagaacgttatcgtgggtcgtctgatcccggcaggt
accggttacgcgtaccaccaggatcgtatgcgtcgccgtgctgcgggtgaagctccggct
gcaccgcaggtgactgcagaagacgcatctgccagcctggcagaactgctgaacgcaggt
ctgggcggttctgataacgagtaa
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