Chania multitudinisentens: Z042_14045
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Entry
Z042_14045 CDS
T02987
Name
(GenBank) RNA ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sfo
Chania multitudinisentens
Brite
KEGG Orthology (KO) [BR:
sfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sfo03016
]
Z042_14045
Enzymes [BR:
sfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Z042_14045
Transfer RNA biogenesis [BR:
sfo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Z042_14045
Prokaryotic type
tRNA splicing ligases
Z042_14045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AHG20614
UniProt:
W0LDZ5
LinkDB
All DBs
Position
complement(448188..449414)
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AA seq
408 aa
AA seq
DB search
MQHNEYELLAAQNAAPVKMWTHGVPVEPEARQQLLNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTKGAIIPAAVGVDIGCGMIAVRTSLLAGDLPDNLSGLRKAIEQAVPHGRTNTRS
RRDKGAWETPPEEVSAHWGQLAPRFKRLTDKYPQLLKTNNHQHLGTLGTGNHFIEVCLDE
QQRVWVMLHSGSRGVGNAIGNVFITLAQQDMQQHIANLPDRNLAYFQEGSRHYDDYIEAV
EWAQDFARQNREVMISRVLAVLSRIVSKPFMTQQEAVNCHHNYVQKEHHFGEEVLVTRKG
AVSAQKGQMGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRIMSRTAAKKRFTVADHIRA
TAHVECRKDSEVIDEIPMAYKDIDAVMVAQSSLVEVVHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcagcataacgagtatgaactgttggcggcgcagaacgcggcgccggtgaaaatgtgg
acccacggcgtccctgtggaacctgaggcgcgtcagcaattgctgaatacggcgaaaatg
ccgtttatttttaaacatctggcggtgatgccggatgtgcatctcggcaaagggtcaacc
attggcagcgttatcccgaccaaaggggcgattattcctgcggcggtgggtgtggatatt
ggctgtggcatgattgccgtgcgtacctcgcttctggctggcgatttgccggataacctc
agcgggctgcgtaaagcgattgagcaggcggtgccacatgggcgtaccaatacgcgttcc
cgtcgcgataaaggcgcatgggaaacgccgccggaagaagtgagtgcccactgggggcaa
ctggcgccgcgttttaaacgcctgaccgacaaatacccgcagttgctgaaaaccaataac
catcagcatctgggaacgttaggaaccggcaatcactttattgaagtgtgcctggatgaa
caacaacgcgtatgggtgatgctgcacagcggctcccgtggtgtgggaaacgccatcggt
aacgtgtttatcacactagcgcagcaggatatgcagcagcatattgcgaacctgccggac
agaaacctggcctatttccaggaagggagtcgtcattatgacgattacattgaagcggtg
gagtgggcgcaggatttcgcccggcaaaatcgggaagtgatgatatcccgcgtgctggcg
gtgctgtcacgtatcgtcagtaaaccgtttatgacccaacaagaggcggtgaattgccac
cacaactatgtccagaaagaacaccattttggcgaagaggtgctggtgacacgtaaaggc
gcggtttcggcacagaaaggccagatggggattattcccggttcaatgggggcgaaaagt
ttcattgtgcgcgggctggggaatgaagagagtttctgctcctgtagccatggcgccgga
agaatcatgagccggacagcggccaaaaaacgtttcaccgtggccgatcacatccgcgcg
acagcccatgttgaatgccggaaagacagcgaggtgatcgatgaaattccgatggcttac
aaagacattgatgccgttatggtggcgcagtcttcgctggtggaggtggttcacaccttg
cggcaggtcgtgtgtgtaaaaggataa
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