Chania multitudinisentens: Z042_25215
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Entry
Z042_25215 CDS
T02987
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfo
Chania multitudinisentens
Brite
KEGG Orthology (KO) [BR:
sfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfo03019
]
Z042_25215
Enzymes [BR:
sfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Z042_25215
Messenger RNA biogenesis [BR:
sfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Z042_25215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
AAA_19
NACHT
nSTAND3
T2SSE
PhoH
AAA_16
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AHG22536
UniProt:
W0LFN8
LinkDB
All DBs
Position
3591631..3595473
Genome browser
AA seq
1280 aa
AA seq
DB search
MLRDQQRLQRRLHGARKINNPAAQQAIATEIGSDIALALQKVQARAAACPKITYPESLPV
SQKKQDIFAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARSVA
SRIADELATPLGSSVGYKVRFNDQVGENTLVKLMTDGILLAEIQQDRLLMQYDTLIIDEA
HERSLNIDFILGYLRELLPKRPDLKVIITSATIDPQRFSRHFNHAPIIEVSGRTYPVEVR
YRPVVDDADDSERDQLQAIFDAVDELGREGPGDVLIFMSGEREIRDTADALNKLNLPHTE
VLPLYARLSNSEQNRVFQSHHGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSFRTK
VQRLPIEPVSQASANQRKGRCGRVSDGICIRLYSEQDFLSRPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAIKTAANGHYQLTPQGRQLAQLPIDP
RLARMVLEAQKSGSVREVMIVTSALSIQDPRERPMDKQQAADEKHRRFADKDSDFMAFVN
LWDYLKEQQKEHSSSQFRRLCRQDFLNYLRVREWQDIYTQLRQVVKELGLPVNSVPSDYR
SIHTALLTGLLSHIGQKDTEKQEFSGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLW
GRIAARIEPEWIEPLAQHLVKHHYSEPHWSKSQGAVMASEKVTLFGLPIVVARPVNYSTL
DPLLCRELFIRHALVEGDWQTRHAFFAANLKLRAEVEELEHKSRRRDILVDDETLFSFYD
QRIPNDVVSGRHFDSWWKTAAKQKPDLLNFEKVMLIKEGANQVSALDYPNTWHQGNLKLR
LTYQFEPGTDADGVTVHIPLPILNQVEGAGFEWQIPGIRRELIIALIKSLPKPVRRNFVP
APNYAEAFLGRATALEMPLLDSLERELRRMTGVTVSRDNWQWDQVPDHLKMTFRVVGEKH
KTLREGKDLLALKLQLKEQVQETLSAVADDGLEQSNLHIWSFGKLPEFYEQKRGGYSVKA
YPALVDEKDSVAIRLFDSEQEQQQAMWRGTRRLLLLNIPSPIKYLHEKLPNKAKLGLYFN
PYGKVLELIDDCISCGIDKLIAEHGGPVWQEDNFAQLQELIRAELNETVVEVAKQVEQIL
TTVFNINKRLKGRVDIALALALADIKAQLGGLVYRGFVTNNGWRRLPDTLRYLQAIERRL
EKLAVDPQRDRAQMWRVEQVQQAWQQWLNKLPPKRQQDDEVKEVRWMLEELRVSLFAQQL
GTPYPISDKRILQTMEQLSL
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgctccgtgaccaacaacgcctgcaacgccggttgcatggcgcccgaaaaattaataat
cccgcagctcaacaggcaattgccactgagatcggcagtgatattgctttggcgttgcaa
aaagtgcaggcacgagcagcggcctgcccgaaaattacctacccggaaagcctccccgtc
agccagaagaagcaggatattttcgcggcaatccgcgatcaccaagtggtgattgtggcc
ggcgaaaccggctcgggcaaaaccacccagttgccgaagatctgcctggaacttggccgt
ggtgtgaaagggctgatcggccacacccagccacgccgcctggcggcacgcagcgttgcc
agccgcattgccgatgagttggccactccattgggtagcagcgtgggctataaggtgcgc
tttaacgatcaggtgggtgagaacacgctggtcaaactgatgaccgacggcatcctgctg
gccgagatccagcaggatcggctattgatgcagtacgataccttgatcatcgatgaagca
catgaacgcagcctgaacatcgactttattctgggctatttgcgggaactgctgcccaaa
cgcccggatctgaaagtgatcattacctcagcgaccatcgatccacagcgtttctcgcgc
cattttaatcatgcgccgattatcgaagtgtcgggccggacttatccggttgaagtgcgt
taccgccccgtggtggatgatgccgacgacagcgaacgtgaccagctacaggccattttt
gatgcggtagacgaactggggcgagaagggccgggtgacgtgttgatcttcatgagcggt
gaacgtgaaattcgcgatacggccgatgcgttgaacaagttaaacctgccgcataccgaa
gtgctgcctttgtacgcacgcttgtcgaacagtgaacagaatcgggtattccaatctcat
cacggccgccgtatcgtgctggcgaccaacgtggcagaaacctcgctcaccgtaccgggg
atcaaatatgtgatcgatccgggaacggcgcgcatcagccgctacagtttccgcactaaa
gtgcagcgtttgcccatcgagccggtttcacaggcttctgccaaccagcgtaaagggcgc
tgtggccgtgtgtcagatggtatctgcatccgtttgtattcggagcaggatttcctgtca
cgccctgaatttaccgatccagaaattctgcgtaccaacctggcttcggtcattctgcaa
atgacttcattagggctgggggatattgcggctttcccgtttgttgaagcaccggataaa
cgcaatattcaggatggcgtgcggctgctggaagaactgggagcgattaaaaccgccgcc
aacggtcattaccaactcactccacaaggccgccaactggcacagttgccgatcgatcca
cgcttggcgcgcatggtgctggaagcccagaaaagcggtagtgtgcgtgaagtgatgatc
gttacttccgccttgtcgattcaggacccgcgtgaacggccgatggataaacagcaggct
gccgatgaaaagcatcgccgctttgctgataaagattccgattttatggcgttcgtcaat
ctgtgggattacctgaaagagcagcagaaggagcactcatccagccagttccgccgcctg
tgtcgccaggatttcctgaactatctgcgtgtgcgtgagtggcaggatatttatacccaa
ctgcgccaggtggtgaaagagctgggcctgccggtcaacagtgtgccttctgactaccgc
agtatacacactgcgttgctgactggtttgctgtctcatatcggccaaaaagatactgaa
aaacaagaattcagcggggcgcgcaatgcccgattttccatttttcccggttcaggcttg
ttcaagaagccaccgaaatggacgatggtggctgaactggtggaaaccagccgcttgtgg
gggcgtattgccgcgcgtattgagccggaatggatcgaaccgctggcgcagcatttggta
aaacaccattacagcgaaccgcactggtcaaaatcccagggggcggtgatggccagcgag
aaagtcacgttgttcggtttgccgatcgtggttgcccgcccggtgaattacagcaccctc
gatccgctgttgtgccgcgagttgtttatccgccatgcgttggtggaaggtgactggcaa
acgcgccatgccttctttgccgctaacctgaaactacgcgccgaagtagaagagctggaa
cacaaatcgcgccgccgcgatattctggtggacgatgaaacgctatttagcttctatgac
cagcgtattcccaatgatgtggtttctgggcggcatttcgatagctggtggaaaacggcg
gccaagcaaaaacctgatttactcaacttcgaaaaggtgatgttgatcaaggagggagcc
aaccaggttagcgcgctggattatccgaatacttggcatcagggcaatctcaagctgcgc
ctgacctatcagtttgagccaggaaccgatgcggatggggtgacggtgcatattccgttg
ccgatcctcaatcaggtagaaggggcggggtttgagtggcaaatccccggtatccgccgt
gaactgattattgctttgattaaatcgttgccaaagccggtacgccgtaattttgtgccc
gcacccaattacgctgaggctttccttggccgcgcaacggcgctggaaatgccattgttg
gactcactggagcgcgagttacgtcgcatgactggcgtgacggtgtcacgtgataattgg
caatgggatcaggtgcccgatcatctgaaaatgactttccgcgtagtgggtgaaaaacac
aaaacgctgcgtgaaggtaaagatctgctggcgttgaaactgcaactgaaagagcaggtg
caggaaacgctctcggcggttgcggacgacggtttggagcaaagtaatctgcatatctgg
agctttggcaagttgccagagttttatgaacagaagcgcggcggctattcggtcaaggct
tatccggctttggtcgatgaaaaagacagcgtggcgatccgcctgtttgacagtgaacag
gaacaacaacaggcgatgtggcggggaacgcgccgcctgctgttgctgaatattccttca
ccgatcaaatatctgcatgaaaagttgccgaacaaagccaaactggggctgtatttcaac
ccttatggcaaagtgctggagctgattgatgactgtatctcatgtggcattgataaactg
attgccgaacacggtgggccggtttggcaagaggataattttgcccagttgcaggagttg
atacgtgcggaactgaacgaaacggtggtggaggtggccaaacaggtcgaacagatcctg
accacggtgttcaacatcaataagcgcctgaaaggcagggtagatatagcgttagcgctg
gcgctggcagatattaaagcacagttagggggcttggtttatcgggggtttgttaccaat
aacggctggcggcgcttgccggacaccctgcgttatttgcaggcaattgaacgccggttg
gagaaacttgccgttgatccgcaacgcgatcgcgcacagatgtggcgagtggagcaggtg
caacaggcctggcagcagtggttgaacaagttgccgccaaaacgccagcaggacgatgaa
gtgaaagaggtgcgctggatgctcgaagagttgcgtgtcagcctgttcgcgcagcaattg
ggtacgccttaccctatttcagataagcgtattctgcaaacgatggaacaactttcgctg
tga
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