Stenotrophomonas forensis: K5L94_02405
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Entry
K5L94_02405 CDS
T10605
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5L94_02405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfoe03019
]
K5L94_02405
Enzymes [BR:
sfoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5L94_02405
Messenger RNA biogenesis [BR:
sfoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5L94_02405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WDM64173
LinkDB
All DBs
Position
complement(519861..521276)
Genome browser
AA seq
471 aa
AA seq
DB search
MSFESLGLAPFLLRALAEQGYENPTPIQQQAIPLALAGRDLLAGAQTGTGKTAAFGLPLL
QHLGTASQEVRSGPRKPRALILAPTRELATQVHDSLRGYSKYLRIPSACIYGGVGMGNQL
DILRRGVDLLVACPGRLIDHLERRSIDLSGIELLVLDEADRMLDMGFLPSIKRILAKLPK
QNRQTLLFSATFEDNIRQLALEFMRNPEQIQVTPKNTVAETITHRVHPVDAGRKRDLLLH
LLAQDSREQTLVFARTKHGSDKLATFLEKSGIKTAAIHGNKSQGQRLRALGDFKAGRVTV
LVATDIAARGIDINELPKVINFDLPMVAEDYVHRIGRTGRNGATGQAISLVAQDEVKLLR
AIVRLLGRDMDIRDVPGFELQTPIRWGNSAPGKAEHDTGERAPRKNHARRPHGDAPRHAH
AGPKKSGGGRREGGGNGQQRAGAGAGQRRGGGGNGGGRGRGQGGNGGGRAG
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgaatcgctgggcctggcgcccttcctgctgcgtgcgctcgccgagcagggc
tacgaaaacccgaccccgatccagcagcaggcgatcccgctggcgctggccggtcgcgac
ctgctggccggcgctcagaccggcaccggcaagaccgccgccttcggcctgccgctgctg
cagcacctgggcaccgcctcgcaggaagtgcgcagcggcccgcgcaagccgcgcgcgctg
atcctggccccgacccgcgaactggccacccaggtgcatgacagcctgcgcggctacagc
aagtacctgcgtatccccagcgcctgcatctacggcggcgtcggcatgggcaaccagctg
gacatcctgcgccgcggcgtggacctgctggtggcctgcccgggccgcctgatcgaccac
ctggagcgtcgcagcatcgacctgtccggcattgaactgctggtgctggacgaagccgac
cgcatgctcgacatgggcttcctgccgtcgatcaagcgcatcctggccaagctgccgaag
cagaaccgccagaccctgctgttctcggccaccttcgaggacaacatccgccagctggcg
ctggagttcatgcgcaacccggaacagatccaggtgacgccgaagaacaccgtggccgaa
accatcacccaccgcgtgcacccggtcgatgccggccgcaagcgcgacctgctgctgcac
ctgctggcgcaggacagccgcgagcagaccctggtcttcgctcgcaccaagcatggcagc
gacaagctggccacgttcctggaaaagtcgggcatcaagaccgcggcgatccacggcaac
aagagccagggccagcgcctgcgtgcgctgggcgacttcaaggcgggccgcgtgaccgtg
ctggtggccaccgacatcgccgcgcgtggcatcgacatcaacgagctgccgaaggtgatc
aacttcgacctgccgatggtggccgaggattacgtgcaccgcatcggccgtaccggccgc
aacggtgccaccggccaggcgatttcgctggtggcgcaggatgaagtgaagctgctgcgc
gcgatcgtgcgcctgctgggccgcgacatggacatccgcgatgtgccgggcttcgagctg
cagacgccgatccgctggggcaacagtgcaccgggcaaggccgagcacgataccggcgag
cgcgcaccgcgcaagaaccacgcgcgccgtccgcacggtgatgcaccgcgccatgcgcat
gccggcccgaagaagtccggcggcggccgtcgcgagggcggtggcaatggccagcagcgt
gccggtgcgggcgcgggccagcgtcgtggtggtggcggcaatggtggcggccgtggccgc
ggccagggtggcaacggcggcggtcgcgccggctga
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