Stenotrophomonas forensis: K5L94_02420
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Entry
K5L94_02420 CDS
T10605
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K5L94_02420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfoe03400
]
K5L94_02420
Enzymes [BR:
sfoe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
K5L94_02420
DNA repair and recombination proteins [BR:
sfoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K5L94_02420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
WDM64176
LinkDB
All DBs
Position
complement(523876..525336)
Genome browser
AA seq
486 aa
AA seq
DB search
MHRRQPDAQRWSQRVDPAWSLQAWRDGARDALLRGVPPEQLDWLEGSEASLLDAPLVQQA
AAPAGATAPNVPREFLDLAATCLCHREPQRLSLLYRLLWRITHGERAVLTNPADADVLRA
MALAQAVRRDTHKMKAFVRFREVPGQPEAFIAWFEPQHHIVDRVAPFFARRFTGMRWAIL
TPSRSVAWDGQALAFGPGARREDAPAEDAREALWQTYYASIFNPARLNTRMMMQEMPAKY
WRHLPEAQLLPRLVRDAGDRVQEMHDRPAQAPQRRIPMREEVATSATDTRSLQTLRQQAS
ACRQCPLWETATQTVFGQGPADAGVMLVGEQPGDTEDLRGQPFAGPAGQLLDRALAELGI
DRAALYLTNAVKHFHHERRGRTRLHKRPESRHIQACRPWLMGEIARVRPQVIVCLGATAA
ASVFGRDFNLSRDRGRWHTLEDGTRGYATVHPAWVLRQGDVVRREKAYRLFRDDLAQLLQ
KGDGGD
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgcaccgccggcagcctgacgcgcagcgctggtcgcagcgggtggacccggcctggtca
ctgcaggcctggcgcgacggcgcgcgtgatgcgttgctgcgcggcgtgccgcccgagcag
ctggactggctcgaaggcagcgaagcgtcgctgctggatgcgccgctggtgcagcaggca
gcggcgccggcaggtgcaaccgctcccaacgtcccgcgcgaattcctcgacctggccgcc
acctgcctgtgccatcgcgagccgcagcgcctgtcactgctgtatcggctgctatggcgg
atcacccatggcgaacgtgcggtgctgaccaaccccgccgatgccgatgtgctgcgtgcg
atggcactggcccaggccgtccgccgtgacacgcacaagatgaaggcattcgtgcgcttt
cgcgaggttccgggccagcccgaggcgttcatcgcgtggttcgaaccccagcaccacatc
gtcgatcgggtggcaccgttcttcgcgcgtcgcttcaccggcatgcgctgggccatcctg
acaccctcgcgcagcgtcgcgtgggatgggcaggcgcttgcctttggcccaggggcacgg
cgtgaggacgctccggccgaggatgcgcgggaggccctgtggcagacctactacgccagc
atcttcaatccggcccggctcaatacgcggatgatgatgcaggagatgccggcgaagtac
tggcggcatctgccggaggcgcagttgctgccgcgcctggtgcgcgatgcaggcgatcgc
gtgcaggaaatgcatgatcgtcccgcacaggcgccgcagcgcaggattcccatgcgtgaa
gaggtggcgacatcggctaccgatacccgcagcctgcagactctgcggcaacaggccagc
gcctgccgccagtgcccactgtgggagaccgcgacgcagacggtgttcggccaggggccg
gccgatgccggcgtgatgctggtgggggaacagcctggcgataccgaggatctgcgtggc
cagcccttcgccggcccggccgggcaactgctggaccgcgcactggccgagctgggtatc
gaccgcgccgcgctgtacctgaccaacgcggtgaagcacttccaccatgagcgccgcggc
aggacccggctgcacaagcgtccggaaagccgccacatccaggcctgccggccgtggctg
atgggcgagatcgcgcgggtgcggccgcaggtcatcgtctgcctgggcgcaaccgcggca
gcctcggtatttggccgtgacttcaatctgtcgcgcgaccgtggacgctggcacacactg
gaggacggcacccgcggctacgccaccgtgcacccggcgtgggtgctgcggcagggcgat
gtcgtacgccgcgagaaggcctatcgcctgttccgcgatgacctggcccagctgctgcag
aaaggggacggaggggattaa
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