Stenotrophomonas forensis: K5L94_06845
Help
Entry
K5L94_06845 CDS
T10605
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5L94_06845
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfoe03019
]
K5L94_06845
03009 Ribosome biogenesis [BR:
sfoe03009
]
K5L94_06845
Enzymes [BR:
sfoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5L94_06845
Messenger RNA biogenesis [BR:
sfoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5L94_06845
Ribosome biogenesis [BR:
sfoe03009
]
Prokaryotic type
rRNA helicases
K5L94_06845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DUF6702
Motif
Other DBs
NCBI-ProteinID:
WDM64997
LinkDB
All DBs
Position
1454505..1456451
Genome browser
AA seq
648 aa
AA seq
DB search
MSQDSQAPLQFAQLGLSEPVMQAVTAIGYETPSPIQAATIPAMLEGRDVLGQAQTGTGKT
AAFALPVLSNIDLQQIKPQALILAPTRELAIQVAEAFQSYSSKIPGFRVLPVYGGQPYGQ
QLSALRRGVHIVVGTPGRVIDHLDRSTLDLSELKTLVLDEADEMLRMGFIDDVEAVLKKL
PEQRQVALFSATMPPQIRRIAQTYLQDPVEVTIAAKTTTSANIRQRYWWVSGMHKLDALT
RILEVEPFDAMIIFARTKAGTEELASKLQARGLAAAAINGDMQQAQRERTIAMLKEGKLD
ILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFATPREKGML
RQIERATRQPIEEMQLPSVEAVNDTRINKFTSRITETLGAGGLDFYRQLLERFENEQNVP
AIEVAAALAKMLQGDTPFLLQPPVRAPREERAPRERFDRGDRPERGDRFDRNERGPRFER
GPRRDDAEGGFEQRPRREVPPRGAPEQGMETYRISVGHQHGVKPANIVGAIANEAGLESR
FIGRIDIHDDFSLLDLPAQMPPDVLSHLQKVWVSGQQLQMRALAPGEDTNPAPRPFKPRF
DKRGPGGPGGPRRGGPGGPGGHGGDRGGDRDSRPPRRDGFKPRGPRSY
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaagattcccaagcgccgctgcagtttgcgcagctcggcctgtccgaacccgtg
atgcaggcggtcaccgccatcggctacgaaaccccgtcgccgatccaggccgccaccatc
ccggcgatgctggaaggccgcgacgtgctgggccaggcccagaccggcaccggcaagacc
gcagcgttcgcactgccggtactgtccaacatcgacctgcagcagatcaagccccaggcc
ctgatcctggcgccgacccgcgaactggccatccaggtcgccgaggcgttccagtcctat
tcgtcgaagattcccggcttccgcgtgctgccggtgtacggcggccagccctatggccag
cagctgtcggcgctgcgccgcggcgtgcacatcgtggtcggtactcccggccgcgtgatc
gaccatctcgaccgcagcaccctggacctgtccgagctgaagacgctggtgctggacgaa
gccgatgaaatgctgcgcatgggcttcatcgatgacgtcgaggccgtgctgaagaagctg
ccggaacagcgccaggttgcgctgttctcggccaccatgccgccgcagatccgccgcatc
gcgcagacctacctgcaggacccggtggaagtgaccatcgcggccaagaccaccacctcg
gccaacatccgccagcgttactggtgggtgagcggcatgcacaagctggacgcgctgacc
cgcatcctggaagtcgagccgttcgatgcgatgatcatcttcgcccgcaccaaggccggc
accgaagaactggccagcaagctgcaggcccgtggcctggccgcggccgcgatcaacggt
gacatgcagcaggcccagcgtgagcgcaccatcgccatgctgaaggaaggcaagctggac
atcctggttgccaccgacgtggccgcccgcggcctggacgtggagcgcatcagccacgtg
ctgaactacgacatcccgtacgacaccgaaagctacgtgcaccgcatcggccgtaccggc
cgcgccggccgcagcggtgaagcgatcctgttcgccaccccgcgcgagaagggcatgctg
cgccagatcgagcgcgctacccgccagccgatcgaggagatgcagctgccgagcgtggaa
gcggtcaacgatacccgcatcaacaagttcacctcgcgcatcaccgaaaccctcggtgcc
ggtggcctggacttctaccgccagctgctggagcgcttcgagaacgagcagaacgtgccg
gccatcgaagtggctgccgcgctggccaagatgctgcagggtgacaccccgttcctgctg
cagccgccggtgcgtgcgccgcgcgaagagcgtgcaccgcgcgagcgcttcgaccgtggc
gaccgcccggagcgtggcgatcgcttcgaccgcaacgagcgcggcccgcgtttcgagcgt
ggcccgcgtcgtgacgatgccgaaggtggtttcgagcagcgcccgcgccgcgaggttccg
ccgcgtggtgcgccggagcagggcatggagacctaccgtatttcggtcggccaccagcac
ggcgtgaagccggccaacatcgtcggcgccatcgccaacgaagcgggcctggaaagccgc
ttcatcggccgcatcgacatccacgacgacttctcgctgctggacctgccggcgcagatg
ccgccggacgtgctgtcgcacctgcagaaggtgtgggtgtcgggccagcagctgcagatg
cgcgcgctggcgccgggtgaagacaccaacccggccccgcgtccgttcaagccgcgcttc
gacaagcgtggtccgggcggcccgggtggcccgcgtcgtggcggcccgggtggtccgggt
ggccacggtggcgaccgcggcggtgaccgcgacagccgcccgccgcgtcgtgacggcttc
aagccgcgcggcccgcgcagctactga
DBGET
integrated database retrieval system
