KEGG   Stenotrophomonas forensis: K5L94_07870
Entry
K5L94_07870       CDS       T10605                                 
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
  KO
K03702  excinuclease ABC subunit B
Organism
sfoe  Stenotrophomonas forensis
Pathway
sfoe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sfoe00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    K5L94_07870 (uvrB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfoe03400]
    K5L94_07870 (uvrB)
DNA repair and recombination proteins [BR:sfoe03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     K5L94_07870 (uvrB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      K5L94_07870 (uvrB)
SSDB
Motif
Pfam: UvrB_inter UvrB_3rd Helicase_C UvrB ResIII DEAD UB2H Flavi_DEAD AAA_30 AAA_22 NPHP3_N P-loop_SecA Cas3-like_C_2 Kinesin
Other DBs
NCBI-ProteinID: WDM65186
UniProt: A0ABY7Y5F4
LinkDB
Position
1684245..1686221
AA seq 658 aa
MSTGMFILHSNYTPAGDQPEAIARLLSDIEEGATHQTLKGITGSGKTFTMANVIHRLKRP
TLILAPNKTLTAQLYSEMKHFFPENAVEYFVSYYDYFQPEIYMPGTDRFIPKDSAINDHL
ERLRLSTTKSLIERRDVIVVASVSSIYGLGDPDAYRALQIALSPGVKLNQRELIRRLALL
QYDRTERTLKRATFRVQGDVIDIFPADSEYRAVRVELLDDTVASVQWMDPVTGKTLGEID
HYLVSPKTLFAPPTNKIDSASKKILADMEERVAELNRNNRLVEANRLYERITHDVEMMRE
VGYCSGMENYSCYFSDRDAASPPITLLDYLPKDGLLFVDESHVMVPQISAMYRGDQARKD
TLIDYGFRLPSSKNNRPLNFDEFEKVKPQTIFVSATPGDYELRVSKGRVVEQVIRPTGLL
DPKVEVRKADGYIDDLLAEISKCVKRKNRVLVTTLTKVSAEELTDFLTDNGIRARYMHSD
IKAEDRVEIINGLRAGEFDVLIGISLLREGLDIPEASLVAILDADRAGFLRSAHALIQMI
GRVARNENGKAILYADAVTPAMKQAIDETNRRRQLQIAFNEENGISPASSVRKLAGEETN
TEEPTVHSEAFCENLSDLCDQITAKEQQLLEFTDTGDEQRVEDIRHQLDGLYRQFIYI
NT seq 1977 nt   +upstreamnt  +downstreamnt
atgtcaaccggtatgtttattctgcactccaactatacgccggcgggggaccagccagag
gcgatcgcgcggctgctgtcggacatagaagaaggtgcgacgcaccagacgctgaaaggt
atcaccggctcaggtaagaccttcaccatggccaatgtgattcatcgtctgaagcggccc
acgttgatcttggctcccaacaagacgttgaccgcgcagctctatagtgaaatgaagcac
ttctttcctgagaatgcggtcgagtacttcgtttcgtattacgactattttcagcccgag
atctatatgccgggcaccgatcgtttcataccgaaggactcggccatcaatgaccacctt
gagcgcctgcgcctgtccacgaccaaatccttgattgagcgtcgtgacgtgatcgtcgtc
gcttcggtgtcttcaatctacggcctgggtgatccagatgcatatcgagcgctacagatc
gctctgtcccctggggtcaaactaaaccagagagagctaattcgtcgcttggctttgctg
caatatgatcgcacggagcgtacgctcaagcgtgcaacgttccgcgtccaaggtgatgtg
attgacattttccccgctgattccgagtacagggcggttcgggtggaactgttggatgac
actgttgcgtctgtccaatggatggaccctgttactggcaagacgttgggagagatagac
cattatttggtttcgccaaaaacgcttttcgcaccgcccacgaacaaaatagattctgca
tccaaaaagatactcgctgatatggaagagcgggttgccgagctgaacaggaataatcgc
ttggtcgaggcaaacagactgtacgagcggatcacgcatgacgtggaaatgatgcgcgag
gtcggctattgctcggggatggagaattattcctgctacttcagcgaccgagacgcagct
tctcctccgatcacgttgctggattatttgccgaaagacgggctgctgttcgtcgatgaa
tctcatgtcatggtgccacagatatccgcaatgtaccggggggatcaggcgcgcaaggac
acgctgatcgattacgggttccgtttgccttcatcgaagaacaaccggccattgaacttt
gacgagttcgagaaggtcaagcctcagaccatctttgtttccgctactccgggcgactac
gagctgagggtgtcgaaaggcagggttgtcgaacaggttatcaggccaacgggactgctt
gaccccaaggttgaagtgcggaaagcggatggatacatagatgacctgcttgccgaaata
tcgaagtgcgtgaagagaaagaatcgagtgcttgtgactacgctgacgaaggtcagtgca
gaagagctaacggatttcttgacggacaacgggattcgagcgcgctacatgcattcggac
ataaaagcggaggatcgtgttgagatcatcaatggcctgcgcgcaggagagttcgatgtt
ttgattgggattagtcttttgcgcgaagggctggatattccagaggcatcattggttgcc
attctcgatgcagaccgtgcagggttcttgcgttcggcccatgcgctcattcagatgatc
ggtcgagtcgctcggaatgaaaacggcaaggcgatcttgtacgccgacgcggtgacgccg
gcgatgaagcaggcgatcgatgagaccaataggcgcaggcagcttcaaattgcctttaac
gaggaaaatgggatttctccagcctcgtctgtgcgaaaactagcaggggaagagacgaat
acggaggagcccaccgttcattccgaggctttctgcgagaacttgtccgacctttgcgat
cagatcactgccaaggaacagcagctactcgaatttaccgataccggtgacgagcagcgc
gtcgaagacattcgtcatcagttggatgggttgtaccggcaattcatttacatctaa

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