Stenotrophomonas forensis: K5L94_09190
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Entry
K5L94_09190 CDS
T10605
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5L94_09190 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfoe03019
]
K5L94_09190 (pcnB)
Enzymes [BR:
sfoe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
K5L94_09190 (pcnB)
Messenger RNA biogenesis [BR:
sfoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K5L94_09190 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
DUF6448
DUF7064
Motif
Other DBs
NCBI-ProteinID:
WDM65906
LinkDB
All DBs
Position
1921060..1922439
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AA seq
459 aa
AA seq
DB search
MGNPETSTGSANIISSATSPFSLRVIPRDQHTISRKDISPNALRVLYRLRDAGFGAYLVG
GAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRAN
SDDGSGDREMENGMLVRDNVYGSIEDDAVRRDFTCNALYYAIEDFSVRDYTGGFEDVQAR
LMKLIGDPEQRYREDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEV
LKLFLSGHGVASFEGLERYGLLDVLFPESAKALKSNRTGALRRMLVEGLANTDARVANDE
PVSPAFLFALLLWPAYCRAQATLLKQGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQ
EIWLLQSRFGSRQRKRVFRTLTHPRFRAAFDFLSLRQVASAEHAADVEFWREAQAQSGRE
LESSLDAMHSEEGDDESGAPRKRRRRRRRPGAPAGAAGE
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttgggcaatcccgaaacttcaaccggaagcgccaacatcatttcctctgctacatcaccg
ttcagcctgcgcgtcatcccgcgcgaccagcacacgatctcccgcaaggacatcagcccg
aacgccctgcgcgtgctttatcgcctgcgcgatgccggcttcggcgcctaccttgtcggc
ggcgcggtgcgtgacctgctggtcaatggccaacccaaggatttcgacgtggccaccgac
gccacgcccgaacaggtcaagcagttgttccgcaactgccgcctgatcggccgccgcttc
cgcctggcccacgtggtattcggccgcgagatcatcgaagtggccaccttccgtgccaac
agcgacgacggcagcggcgaccgcgagatggaaaacggcatgctcgtgcgcgacaacgtg
tacggctccatcgaagacgatgccgtccgccgtgacttcacctgcaacgcgctgtactac
gccatcgaggacttctcggtgcgtgactacaccggcggcttcgaagacgtgcaggcgcgc
ttgatgaaactgatcggcgaccccgagcagcgctaccgcgaagacccggtacgcatgctg
cgtgcggtgcgcctggcggccaagctcggtttccagatcgaagagggcaccgccgcgccg
attccgcatctggctggcctgctcaacgaagccgcgccagcgcgcctgttcgaggaagtg
ctcaagctgttcctgtccgggcatggcgtggccagcttcgaaggcctggagcgctacggc
ctgctggatgtgctgttcccggaaagtgccaaggcgctcaagtccaaccgcaccggcgcg
ctgcgccgcatgctggtcgagggcctggccaacaccgatgcgcgcgttgccaatgacgag
ccggtctcgccggcgttcctgttcgcgctgctgctgtggccggcctactgccgcgcgcag
gcgaccctgctcaagcagggcgtggcaccggaagaggcacagcggcgtgccgccgaccgt
gtgaccgtgcagcagctgagcaccatcgcgctgccgcgccgcttctcgctgccgatgcag
gagatctggctgctgcagtcgcgtttcggctcgcgccagcgcaagcgcgtgttccgcacc
ctgacccatccgcgcttccgtgctgcgttcgatttcctcagcctgcgccaggtggcttcg
gccgagcacgccgccgatgtcgagttctggcgcgaggcgcaggcgcagtccgggcgcgaa
ctggagtcgtcgttggatgcgatgcacagcgaagagggagatgacgaaagcggagcaccg
cgcaagcgtcgccgccgtcgtcgtcgcccgggtgccccggccggtgcggcgggcgagtaa
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