Stenotrophomonas forensis: K5L94_14640
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Entry
K5L94_14640 CDS
T10605
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
K5L94_14640 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfoe03400
]
K5L94_14640 (sbcB)
Enzymes [BR:
sfoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
K5L94_14640 (sbcB)
DNA repair and recombination proteins [BR:
sfoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
K5L94_14640 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K5L94_14640 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K5L94_14640 (sbcB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
BON_like
Motif
Other DBs
NCBI-ProteinID:
WDM62346
UniProt:
A0ABY7XX98
LinkDB
All DBs
Position
3139502..3140941
Genome browser
AA seq
479 aa
AA seq
DB search
MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIETPVSFFVRPADDLLPSPMATLV
TGITPQQAMAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFIRYGLFRNFHDPYER
EWRNGNSRWDLLDMLRLMRAMRPDGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD
VRATIGMARLFKQSQPRLWEYALKLRDKRFVGGLLDIAALKPVLHVSMRYPASRLCAAPV
LPLAVHPTINNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGVARVPLKEVHLNK
VPALIAWNHLRADDHERLGLDVAAIEAKVERLRPFAAQLAEKARQVYNQPRAATVADVDA
SLYDGFLGNGDKPLLALARTTAPEQLAELEGRFRDPRLPELLFRYRARNHPGSLAPAERQ
RWQDYRRQRLLGDGGLGELNLPQYQQQLDALAADAPDDARRQALLQSLRDWGQHLQETL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccgacagcttcctgttctacgacctggaaaccttcggccaggatccgcgccgcacg
cgcatctcgcagtacgcggcgatccgcaccgacgctgacctcaacgagattgaaacgccg
gtcagcttcttcgtgcgcccggccgacgacctgctgccctcaccgatggcgacgctggtc
accggcatcacgccgcagcaggccatggccgaaggcatcagcgaagcggaggctttcgac
cgcatcaacgaacagctgtcacgccccggcacctgcgcactgggctacaacacgctgcgc
ttcgacgacgagttcatccgctacggcctgttccgcaatttccatgacccgtacgaacgc
gagtggcgcaacggcaattcgcgctgggacctgctggacatgctgcggctgatgcgcgcc
atgcgcccggacggcatccagtggccgctgcgcgaagacggcgccacctcgttcaagctc
gaacacctggccgaagccaacaacgtgcgcgaaggcgatgcgcacgaagcactgtccgac
gtgcgcgccaccatcggcatggcgcgcctgttcaagcagtcgcagccgcgcctgtgggag
tacgcgctgaagcttcgcgacaagcgtttcgtcggtggcctgctggacatcgccgcgttg
aaaccggtgctgcacgtctcgatgcgctacccggccagccgcctgtgcgcggcgccggtg
ctgccgctggcggtgcacccgaccatcaacaaccgggtgatcgtgttcgacctcgatggc
gacatcgacgacctgctggaactaccggccgaagtgatcgcgcagcgcctgtacatgcgt
gccagcgagctgcccgaaggcgtggcgcgggtgccgctgaaggaggtgcacctgaacaaa
gtgccggcactgatcgcctggaaccacctgcgcgccgacgaccatgaacgcctgggcctg
gacgtggcggccatcgaggccaaggtcgaacggctgcgtcctttcgccgcgcagctggcc
gaaaaggcacgccaggtctacaaccagccccgcgccgccaccgtggccgacgtcgacgcc
tcgctgtacgacggcttcctcggcaacggcgacaagccattgcttgccctggcgcgcacc
accgcaccggaacagctggccgagctggaaggccgtttccgcgacccgcgcctgcccgag
ctgctgttccgctaccgtgcgcgcaaccatcccggcagcctcgcgccggctgaacgccag
cgctggcaggattaccgccgccagcgcctgctcggagacggcggcctgggtgaactcaac
ctgccccagtaccagcagcagcttgatgcactggccgccgatgcacccgacgatgcgcgg
cgccaggccctgctgcaatcgctgcgcgactggggccagcatctgcaggagacgttgtga
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