Stenotrophomonas forensis: K5L94_17195
Help
Entry
K5L94_17195 CDS
T10605
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sfoe Stenotrophomonas forensis
Brite
Enzymes [BR:
sfoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K5L94_17195 (hrpA)
Messenger RNA biogenesis [BR:
sfoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K5L94_17195 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WDM62827
LinkDB
All DBs
Position
complement(3717716..3721798)
Genome browser
AA seq
1360 aa
AA seq
DB search
MNSIDKNPSPRLRQQRAAIDGAMSRDRGRLLGMLSRCQAKPQDAALAATFEQALQASVQR
RQMRAQQQPSITLDPQLPIAREADAIIELIRDHQVVVIAGETGSGKTTQLPKLCLAAGRG
QAGMIGCTQPRRIAARAVASRVAQELQSELGQLVGYQVRFNDKVSEDSRIKFMTDGILLA
EIASDRWLSNYDTIIVDEAHERSLNIDFLLGYLKQLLRKRPDLKLIVTSATIDTGRFAEH
FDNAPVISVEGRTFPVEVRYRALEGEGEEQGERTVNDAIVSAIDEITRLDARGDVLIFLP
GEREIRDAHQSLERRKYRNTEVLPLYARLSNQDQDRVFNPGPNRRIVLATNVAETSLTVP
RIRYVVDPGFARVKRYSPRNKLDRLHIEPISQASANQRKGRCGRIAEGICYRLYAEADFQ
ARPEFTDPEIRRSSLAGVILRMLQLGLGRIEDFPFLEAPDERAVADGWQQLTELGAIDAE
RRMTTIGKQMARLPVDVKLARMLVAAQAAGCLRPMLVIASFLGIQDPRERPPEARGAADS
AHAQFADGRSEFVGVLRLWDAYRQAHEDLTQSKLRDWCGRHFLGFLRMREWRELHRQLRL
LCEELGWKEEAADASMAPLLAGSSTPAPARDDAAAVKATRGQLHRAARLAREGKSETAPA
PVAVRAQREQAPAGGGFSERVRAAAYQTLHRALVAGLPTQIGHRTEKGDFQAPRQRRFLP
FPGSALSKRPPPWLLAANLLDTQKVWGMTLAAIEPDWVIAELPHLLLRKHFDPHWSRAQG
QVLASEQISLFGLVLAPKKPVHYGRIEPGEAHDIFVRQALVTGEINTRASFVADNQKVLE
VAREEEAKLRRAGIVADEDWQARWYLDRVPPQIHSAAGLDTWWKGLAPEQRKTLHWSLVD
LLPGEGSEQERYPKYLALGQARLPLHYRFEPGADDDGVTLDVPLHLLNALDPVQLGWLAP
GFVVDKASALIRSLPKAMRRNYVPAPDFGRAFFEAFPQPSADAITGELARFLSRATGATV
TALDFEPGAIEPHLHMNLRLRDEHGKVLATSRDLDALRAKFGGRAGDAFAARAGREMAAD
GLRTFPATPIPLQVPGEAGVPAYPALLDEGDSVALRIFADRQQAQEAHPLGVRRLLEIAL
AEKVKQARKQLPVGAKTGLLYAAIESQERLRGDLVDAAMNAVLADGLEDIRDAAAFEQRR
DHAAKALFGEAMSRLKLAESILALVAELKPMLEAPLMGWARGNLDDMEAQLVGLIHPGFL
RDTPADALAQYPRYLKAMILRTERAKRDPPRDQARMLELHPFLDALRDAEAQGLRERPQW
QALRWDLEELRVSLFAQELGARTGISAKKLAQRVTALRQA
NT seq
4083 nt
NT seq
+upstream
nt +downstream
nt
atgaactctatcgataaaaatccatcgccccgcctgcgccagcagcgtgccgccatcgac
ggcgccatgagccgcgaccggggccgtctgctgggaatgctctcgcgttgccaggccaag
ccacaggatgcggcgttggccgccaccttcgagcaggccttgcaggcatcggtgcagcgc
cggcagatgcgggcgcaacagcagccatccattactctggacccgcagctgccgattgcg
cgtgaagccgacgcgatcatcgagctgatccgcgaccaccaggtggtggtgattgccggc
gaaaccggttcgggcaagaccacccagctgccgaaactgtgcctggccgcgggccgtggc
caggccggcatgatcggttgcacccagccgcggcggattgccgcacgtgcggtggccagc
cgcgtggcgcaggaactgcagagcgaactgggccagctggtcggctaccaggtgcgcttc
aacgacaaggtcagcgaagacagccgcatcaagttcatgaccgacggcatcctgctggcg
gagatcgccagtgaccgctggctgtcgaactacgacacgatcatcgttgacgaagcgcac
gaacgcagcctcaacatcgacttcctgctgggctacctgaagcaactgctgcgcaagcgc
ccggacctgaagctgatcgtcacctcggccaccatcgacaccggacgattcgccgagcat
ttcgacaatgcgccggtgatcagcgtcgagggccgcaccttcccggtggaagtgcgttac
cgcgcgctggaaggcgagggcgaagagcagggcgagcgcaccgtcaacgatgccatcgtg
tcggccatcgacgagatcacccgcctggatgcgcgcggcgacgtgctgatcttcctgccg
ggcgaacgtgagatccgcgacgcgcaccagtcgctggagcgccgcaagtaccgcaatacc
gaagtgctgccgctgtacgcgcggctgtccaaccaggaccaggaccgggtgttcaacccc
ggcccgaaccggcgcatcgtgctggccacgaatgtggccgaaacctcgctgacggtgccg
cgcatccgctacgtggtcgaccccggtttcgcccgcgtcaagcgttacagcccacgcaac
aagctggaccgcctgcacatcgagccgatctcgcaggccagcgccaaccagcgtaagggt
cgctgcggccgtatcgccgaaggcatctgctatcgcctgtatgccgaggctgatttccag
gcgcggccggagttcaccgatccggaaatccgccgctccagcctggccggggtgatcctg
cgcatgctgcagctgggcctgggccgcatcgaggacttcccgttcctggaggcgccggat
gaacgtgcggtggccgatggctggcagcagctgaccgaactgggcgcgatcgatgccgag
cggcgcatgactaccatcggcaagcagatggcacgcctgccggtggacgtgaagctggcg
cgcatgctggtggccgcgcaggccgccggctgcctgcggccgatgctggtgatcgcctcg
ttcctgggcatccaggacccgcgcgagcgcccgcccgaagcccgtggcgcggccgacagc
gcgcatgcgcagttcgccgatggccgctccgaattcgtcggcgtgctgcgcctgtgggat
gcctaccggcaggcccacgaagacctgacccaatccaagctgcgcgactggtgcggccgc
catttcctcggcttcctgcgcatgcgcgagtggcgcgagctgcaccgccagctgcggctg
ctctgtgaggaactgggctggaaggaagaggctgccgatgcgtcgatggcaccgttgctg
gccggcagcagcacgccggcgccggcgcgtgacgacgcggcggcggtgaaggccacccgt
ggccagctgcaccgcgccgcgcgcctggcccgcgaaggcaagtccgaaaccgcgccggca
cccgtggccgtgcgcgcacagagggaacaggcgccggccggcggtggtttcagcgagcgc
gtgcgcgcggccgcctaccagaccctgcaccgcgcactggtggcgggcctgccgacgcag
atcggccaccgcaccgagaagggcgatttccaggccccacgccagcgccggttcctgccg
ttcccgggctcggcgctgtccaagcggccgccgccgtggctgctggcggccaacctgctg
gacacgcagaaggtgtggggcatgaccctggccgcaatcgagccggactgggtgatcgcc
gaactgccgcacctgctgctgcgcaagcacttcgatccgcactggtcgcgcgcgcagggc
caggtgctggcgtccgagcagatcagcctgttcggcctggtgctggcgccgaagaagccg
gtgcactacggccgcatcgagccgggcgaggcgcacgacatcttcgtgcggcaggcgctg
gtgaccggcgagatcaacacccgtgccagcttcgtggccgacaaccagaaggtgctggag
gtcgcgcgcgaggaagaggccaagctgcgccgcgccggcatcgttgccgacgaggactgg
caggcgcgctggtacctggaccgggtgccgccgcagatccattcggcggcgggtctggat
acctggtggaagggactggcgccggagcagcgcaagacgctgcactggtcgctggtcgac
ctgctgcccggcgaaggcagtgaacaggagcgctacccgaagtacctggcgctgggccag
gcgcggttgccgctgcattaccgcttcgaaccgggcgccgacgatgacggcgtgaccctg
gacgtaccgctgcacctgctcaacgcgctggatccggtgcagctgggctggctggcgccg
ggcttcgtggtggacaaggcctcggcgctgatccgcagcctgcccaaggcgatgcgccgc
aactatgtgccggcgccggacttcggccgcgcgttcttcgaggcgttcccgcagcccagc
gccgatgccatcaccggtgagctggcacgcttcctgtcacgcgcgaccggtgccacggtg
accgcgctcgatttcgagcccggtgcgatcgaaccgcacctgcacatgaacctgcgcctg
cgcgacgagcacggcaaggtgctggccacgtcgcgtgacctcgatgcgctgcgcgcgaaa
ttcggtggtcgtgccggcgatgccttcgcggcgcgtgccgggcgcgagatggcggccgat
ggcctgcgtacgttcccggcgacgccgattccgctgcaggttcccggcgaagcgggtgtg
ccggcctatccggcattgctcgatgaaggcgacagcgtggcgctgcgcatcttcgccgac
cgacagcaggcgcaggaagcccatccgctgggcgtgcgccgcctgctggagatcgccctg
gccgagaaggtcaagcaggcacgcaagcagctgccggtgggcgccaagaccggcctgctg
tatgccgcgatcgaatcgcaggaacgcctgcgcggcgatctggtcgatgcagcgatgaac
gcggtgctggctgacggcctggaggacatccgcgatgcggcagccttcgagcagcgtcgc
gaccacgcggccaaggcgctgttcggcgaggcgatgtcgcggctgaaactggccgagtcc
atcctggcgctggtggccgagctgaagccgatgctggaggcgccattgatgggctgggcg
cgcggcaacctggatgacatggaagcgcagctggtgggcctgatccaccctggcttcctg
cgcgacacgccggccgacgcgctggcgcagtatccgcgctacctgaaggcgatgatcctg
cgcaccgagcgggccaagcgcgatccaccgcgcgaccaggcacgcatgctggagctgcat
ccgttcctggacgcactgcgcgatgctgaggcacagggcctgcgtgaacgcccgcaatgg
caggcactgcgctgggacctggaggaactgcgggtgtcactgttcgcgcaggagctgggc
gcgcgcaccggcatctcggcgaagaagctggcgcagcgggtaaccgcactgcgccaggcg
tga
DBGET
integrated database retrieval system
