Stenotrophomonas forensis: K5L94_19615
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Entry
K5L94_19615 CDS
T10605
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
K5L94_19615 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfoe03021
]
K5L94_19615 (rpoD)
Transcription machinery [BR:
sfoe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
K5L94_19615 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WDM63283
UniProt:
A0ABY7Y007
LinkDB
All DBs
Position
complement(4268543..4270396)
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AA seq
617 aa
AA seq
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MANERPAQSEIKQLISKGLEQGYLTYAEVNDHLPDDMVDPEQIEDIIGMINGMGIDVHEV
APDVETLLLNDGNTGNREVDDTAAEEAAAALSALDTEGGRTTDPVRMYMREMGTVELLTR
EGEIAIAKRIEEGLSQVQAALGQFPVSVESLLNDYEAHKEGKKRLAEVIVGFNDLTDEAP
APAAATADDSDDADADGDEDEDDDVEGGEEEAAPTGPDPEEVAARMQALSDAFTAFKKAA
TKGDKKNLPRLREEMSAVFVTLKLPLPLTDVLTKQLRDTMADIKSHERRVLNLATVTARM
PRKDFIRSWEGNQTNLEWVEDALKRKQKWSSALREVKDQIIAEQQATIDIEKLTQLDLEE
LKEISRAMAYGEAKARKAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQQYGRE
ATPEELAKEMDMPEDKIRKVMKIAKEPISMETPIGDDEDSHLGDFIEDTNVESPIENTTN
INLSETVRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSEQLRSFLDID
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgaacgtcctgcccaatccgaaatcaagcaactgatcagcaagggcctggaa
cagggctacctgacctacgccgaagtcaatgaccatctgccggacgacatggtcgacccg
gaacagatcgaagacatcatcggcatgatcaacggcatgggcattgatgtccatgaagtt
gcgccggatgtggaaaccctgcttctcaacgacggcaacaccggtaaccgcgaagtcgat
gacaccgcggccgaagaagccgccgccgcgctgagcgcgctcgacaccgaaggtggccgt
accaccgacccggtgcgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacccgc
gaaggcgaaatcgccattgccaagcgcatcgaggaaggcctttcgcaggtgcaggccgcc
ctgggccagttcccggtgtcggtcgagtcgctgctgaacgactatgaagcccacaaggaa
ggcaagaagcgcctggccgaagtgatcgtcggcttcaacgaccttacggacgaagccccg
gcgccggccgcggctactgctgatgacagcgacgatgccgacgccgatggcgacgaggac
gaggacgatgatgtcgagggtggcgaggaagaagccgcaccgaccggtccggacccggag
gaagtcgccgcgcgcatgcaggcgctgagcgatgccttcactgccttcaagaaggcggcg
accaagggcgacaagaagaacctgccgcgcctgcgcgaagagatgtcggcggtgttcgtc
accctgaagctgccgctgccgctgaccgacgtgctgaccaagcagctgcgcgacaccatg
gccgacatcaagtcgcatgagcgccgcgtgctgaacctggccaccgttaccgcccgcatg
ccgcgcaaggacttcatccgttcctgggaaggcaaccagaccaacctggaatgggtggaa
gatgcactgaagcgcaagcagaagtggtcttcggcgctgcgtgaagtgaaggaccagatc
atcgccgaacagcaggcgacgatcgacatcgagaagctgacccagctggacctggaagag
ctgaaggaaatcagccgtgccatggcctacggtgaagccaaggcgcgcaaggccaagaag
gaaatggtcgaggccaacctgcgcctggtaatctcgattgccaagaagtacaccaaccgc
ggcctgcagttcctcgacctgatccaggaaggcaacatcggcctgatgaaggccgtggac
aagttcgagtaccgccgcggttacaagttctcgacctacgccacctggtggatccgccag
gcgatcacccgctcgattgccgaccaggcacgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagttgaaccgcatttcccgccagatgctccagcagtacggccgcgag
gccacgccggaggagctggccaaggaaatggacatgccggaagacaagatccgcaaggtg
atgaagatcgccaaggagccgatctcgatggaaaccccgatcggcgacgacgaggattcc
catctgggcgacttcatcgaggacaccaatgtggagtccccgatcgagaacaccaccaac
atcaacctgtctgaaaccgtgcgcgacgtgctggccggcctcaccccgagggaagccaag
gtgctgcgcatgcgcttcggcatcgacatgaacaccgaccacacgctggaagaggtcggc
aagcagttcgacgtgacccgcgagcgcatccgccagatcgaagcgaaggccctgcgcaag
ctgcgtcacccgagccgctcggagcagctgcgcagcttcctggatatcgattga
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