Stenotrophomonas forensis: K5L94_20120
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Entry
K5L94_20120 CDS
T10605
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K5L94_20120 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfoe03019
]
K5L94_20120 (rhlB)
Enzymes [BR:
sfoe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K5L94_20120 (rhlB)
Messenger RNA biogenesis [BR:
sfoe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K5L94_20120 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RhlB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
WDM63376
UniProt:
A0ABY7Y095
LinkDB
All DBs
Position
complement(4379471..4381192)
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AA seq
573 aa
AA seq
DB search
MSDKPLTDLTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKT
LAFLVAVVNRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYG
GVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDI
RFLLRRMPERTIRQTLLFSATLSHRVLELAYEHMNEPQKLVVEAETITAARVRQRIYFPA
DDEKIPLLLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLL
NRFQKGQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISF
ACERYAMGLPDIEAYIEQKIPSEPVTKELLTPLPRPERPAPAAGEEGEENESVGQIFREA
REARAAEEERRGGGRSGGRSGGGRGERRDGERSGERRSRGPRKPRVEGGQASAAPAEGAE
AAVAQAPRPPRPPRAEGAPEGAVEGERKPRKRRRRRHGRPVEGAEGVQNTAGNGASPVTP
VQVVAKPVRTAADTGDSFLTRIGRKIRRMLSGS
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacaaaccgctgaccgatttgaccttctcctccttcgagctgcatccggccctg
caggctggtcttgaaggagccggattcacccgctgcacgccgatccaggcgctgaccctg
cccgtcgcgcttcccggtggtgatgtcgccggccaggcgcagaccggcaccggcaagacc
ctggccttcctggtcgctgtcgtgaaccgcctgctgacccgcccggccctggccgaccgt
aagccggaagatccgcgcgcgctgatcctcgccccgacccgtgaactggccatccagatc
cacaaggatgcggtgaagttcggttccgacctgggcctgcgcttcgcgctggtctacggc
ggcgtggattacgacaagcagcgcgaactgctgcagcagggcgtggacgtgatcatcgcc
accccgggccgcctgatcgactacgtcaagcagcacaaggtggtttcgctgcacgcctgc
gagatctgcgtgctggacgaagccgaccgcatgttcgacctgggcttcatcaaggacatc
cgcttcctgctgcgccgcatgcccgagcgcaccatccggcagaccctgctgttcagcgcc
accctcagccaccgcgtgctggagctggcctacgagcacatgaacgagccgcagaagctg
gtggtcgaagccgagaccatcaccgccgcgcgcgtgcgccagcgcatctacttcccggcc
gacgacgaaaagatcccgctgctgctgggcctgctgtcgcgcagcgaaggcgcgcgcacc
atggtgttcgtcaataccaaggtgttcgtcgagcgcgtcgcccgttcgctggaaaaggcc
ggctatcgcgtcggcgtgctgtctggcgacgtgccgcagaagaagcgtgagagcctgctc
aaccgcttccagaagggccagctggaaatcctggtggccaccgatgtggccgcccgcggc
ctgcatatcgacggcatcaagtacgtctacaactacgacctgccgttcgatgccgaagac
tacgtgcaccgcatcggccgtaccgcgcgcctgggcgaagagggtgatgcgatcagcttc
gcctgtgagcgctacgccatgggcctgccggacatcgaggcgtacatcgagcagaagatt
ccgtccgagccggtgaccaaggaactgttgaccccgctgccgcgcccggaacgcccggcc
ccggccgctggcgaggaaggcgaggagaacgagagcgtcggccagatcttccgtgaagcg
cgcgaagcccgcgccgccgaggaagagcgtcgtggtggtggccgcagtggcggccgctcc
ggcggtggtcgtggcgagcgtcgcgacggtgagcgcagcggcgagcgccgttcgcgtggc
ccgcgcaagccgcgcgtggaaggcgggcaggcgtccgccgcgccggctgaaggtgccgag
gccgccgtggcacaggccccgcgtccgccgcgcccgccgcgtgccgaaggcgcaccggaa
ggggcggtggagggcgagcgcaagccgcgcaagcgccgtcgtcgtcgccacggccgtccg
gtcgaaggcgccgagggcgtgcagaacaccgccggcaacggcgccagcccggtcaccccg
gtgcaggtggtggccaagccggtgcgaaccgccgccgataccggcgattcgttcctgacc
cgcatcggccgcaagatccgccggatgctgtcgggcagctga
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