Spirosoma foliorum: H3H32_22395
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Entry
H3H32_22395 CDS
T09363
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sfol
Spirosoma foliorum
Pathway
sfol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3H32_22395
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfol03019
]
H3H32_22395
Enzymes [BR:
sfol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3H32_22395
Messenger RNA biogenesis [BR:
sfol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3H32_22395
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QMW00728
UniProt:
A0A7G5GPD6
LinkDB
All DBs
Position
complement(5269342..5270670)
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AA seq
442 aa
AA seq
DB search
MTFDELNLNKPLSNALEDLGYTTPTTIQQNVFSVVMSGRDVCGLAQTGTGKTLAYLLPCL
RQLQFSKEKLAQLLIIVPTRELVVQVLETVNQLTAYMNLTAVGVYGGVNLKPQAAEVQKG
MDILVATPGRLVDLLSNGTFKTKAIKKLVIDEVDEMLDLGFRTQLKIILDLLPPKRQNLL
FSATLTIEVEKLIETFFNNPVRVEAAPVGTPLENIAQSAYEVPNFYTKINLLKLLLNQDA
TMTKVLVFVATKQLADQVYEEMDAKFPGQLGIIHSNKAQNQRFEAVDNFKSGAFRILIAT
DIIARGLDVAEVSHVINFDMPDVPENYIHRIGRTGRADQKGIAITFITPADEEKQEAIEA
LMNYQIPLVPLPEDLAISEVLTEAEKPKVHMKMPEVKAPKREDVGPAFHEKLAKNKKVNV
RRDHAAEKMLKYGRPIKRSGKK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgacgtttgatgaactgaatctgaataaaccgctgagtaatgccctggaagacctgggc
tacacgacacccacaaccattcagcagaatgtgttttcggttgttatgtcgggacgggat
gtgtgcggactggcgcaaacaggaacggggaaaacactggcgtatctgctgccctgcctt
cgtcagctccaattttcgaaagagaaactggcccaacttctgatcatcgttcccacgcgc
gaactggtcgtgcaggtgctggaaacggtgaaccaattaactgcctacatgaacctgaca
gcggttggcgtgtatgggggcgtcaatctgaaaccacaggcggctgaagtgcagaaaggc
atggatatcctggtcgctacgcccggtcggctggtcgatctgttgtcgaatggtacattc
aaaacgaaggcgatcaaaaaactggtcatcgacgaagtggatgaaatgctggatcttggg
ttccgtacgcagctaaaaatcattctggacctactaccacccaagcgacaaaacctgctg
ttttcagctacactaacgattgaggttgagaagttaatcgaaacgtttttcaacaatccg
gttcgggtagaagccgcgccagttggaacacccctggaaaacattgcgcaatcggcttat
gaggttcctaacttttacacaaaaattaacctcctgaaattgttgctgaatcaggacgcc
acaatgactaaagtgctagtctttgtggcaaccaagcaactggccgatcaggtttatgaa
gaaatggatgccaaatttcctggtcagctaggaattattcactcgaacaaggcacaaaat
cagcgatttgaggctgttgataactttaagtcgggcgcgtttcgtattctgattgctacg
gatatcatcgctcgcggattagacgtagctgaagtgtcgcacgtgatcaatttcgatatg
cccgacgtgccggaaaactatatccaccggattggccgaacggggcgcgccgaccagaaa
ggcattgcaataaccttcatcacacctgccgatgaggagaaacaggaggccatcgaagcg
ttgatgaattaccagattccgctagtaccattaccggaagatctggccatttcggaggtg
cttacagaggctgaaaaaccgaaggttcacatgaaaatgccagaggtaaaagcacctaaa
cgcgaagacgttgggccagcttttcacgagaaactggctaagaataaaaaagtaaatgtc
cggcgcgatcacgcagccgaaaaaatgttaaaatatggtcgacccattaaacgaagcgga
aaaaaataa
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