Spirosoma foliorum: H3H32_25295
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Entry
H3H32_25295 CDS
T09363
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sfol
Spirosoma foliorum
Pathway
sfol03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sfol00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3H32_25295 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfol03021
]
H3H32_25295 (rpoC)
03400 DNA repair and recombination proteins [BR:
sfol03400
]
H3H32_25295 (rpoC)
Enzymes [BR:
sfol01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3H32_25295 (rpoC)
Transcription machinery [BR:
sfol03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3H32_25295 (rpoC)
DNA repair and recombination proteins [BR:
sfol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3H32_25295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QMW01259
UniProt:
A0A7G5GQW7
LinkDB
All DBs
Position
5982624..5986973
Genome browser
AA seq
1449 aa
AA seq
DB search
MSFKKNKKLNSDFASVTISLASPESILESSYGEVTQPETINYRTYKPEMGGLFCERIFGP
VKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYLLGLSTKKLDQVIYYERYVVVQPGVKAEDGINQLDFLTEDEYLDIIDKLPSSNQHLDD
KDPNKFIAKMGAEALEMLLSRVELDELSYSLRHAAATDTSQQRKAEALKRLKVVEAFREA
NGRIENRPEWMVIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIK
APEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDRKDP
VIWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDGDQM
AVHVPLGQEAVLEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSIPEYPIV
GEGMTFYGTEEVIIGINEGKVSKHANIKCRVKVRDENGDLVWKVIDTVAGRLLFNQAVPE
EVGYINELLTKKKLQQIIALIFKISGGARTAQFLDEIKELGFQMAFKGGLSIGLSDIMIP
EAKQPLVEEAKAEVQGVWDNYLMGLITENERYNQVIDIWTRVNSRLTETLMKQLEADQGG
FNSIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLDVLE
YFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIISEDDCGTLRGLQVSALKDNEDI
VEPLSERILGRTTVHDIYDPLSKELIIASGELVTEEVAAQIDETSIETVEIRSVLTCESR
QGVCAKCYGRNLASGRMVDIGEAVGVIASQSIGEPGTQLTLRTFHVGGTASNIAVDASIK
AKFDGLIELEEMRTVESEDAEGNPQTVVMGRSGEVRIVNPDDRNQVLISNNVPYGAFLRV
KEGDIVKKGDDICAWDPYNAVILSELTGTLNFDAIEDGITYREEFDEQTGFQEKVIIETR
DKAKNPAIVVQGTTTLSLHLPDNDGGPLQKSYNLPVGSRLVVKEGQKIKAGQPLAKIPRN
VGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVTYGTIKRGNREIFIESKDGTKKKY
LVPLSKFILVQDNDFVRAGAPLSDGAITPSDILAIKGPTAVQEYLVNEIQEVYRLQGVKI
NDKHIEAIVRQMMQKVEIIDSGDTNFLEGQVVDKWAFREENDKILDAKVVTDAGDSVNFK
PGMIVTSRQLRDENSSLKRRDMALAVVRDAMAAVSQPTLMGITQSSLGTDSFISAASFQE
TTKVLSEASIRGKRDVLDGLKENVIVGHLIPAGTGLRRYQGTIVGSKEELETVTESREQF
ARSKKRATV
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcaaaaagaacaagaaactcaacagcgactttgccagtgtgacgatcagtctg
gcatcgccggagtctattttggagagttcctacggcgaagtgacacagccggagaccatc
aactaccggacctacaaacccgaaatgggcggcttattctgcgagcgcattttcgggcct
gtaaaggactgggaatgtcactgcggtaagtacaagcggattcgctataaaggcattatc
tgcgatcgttgtggcgtagaagtaaccgagaaaaaggttcgccgggagcgtatgggccac
atcgaactggtggtgcctgttgcgcatatctggtatttccgcagcttgccgaacaaaatt
gggtatctgctgggcctttcgaccaaaaaactcgaccaggttatttactacgaacgctac
gtagttgtgcaacccggtgttaaagccgaagatggcatcaaccaacttgacttcctgacg
gaagacgagtatctggacatcatcgataaattgccgagcagcaaccagcacctcgacgac
aaagaccccaataaattcatcgccaaaatgggcgctgaagcgttggaaatgttgttgtcg
cgagtagagcttgatgagttatcgtactcattgcgccacgctgctgctaccgatacatca
caacaacgaaaggcggaagcgctgaaacgattgaaagtcgttgaagcattccgggaagcc
aatggccgtattgaaaaccgtccagaatggatggtgatcaagatggttccggttattcca
cccgaattgcgcccactcgtccccttggatggtggtcggttcgccacttccgatttgaat
gacctgtatcgtcgggtaatcatccggaacaaccgtctgaagcgtcttatcgaaatcaaa
gctcccgaagtaattctccgtaacgaaaaacggatgttgcaggaagctgtcgattcgctg
ttcgataactcacgtaaggtaaacgccgttcgttcggagggtaaccgcgcgctgaagtcg
ttgtctgacatgctgaaagggaagcaaggtcgtttccgtcagaacctgcttggtaagcgt
gtcgactattcaggtcgttcggttatcgtggttggtcccgaattgaaactgcacgagtgc
ggtctgccgaaagacatggctgccgaattgttcaagccgtttgttattcgcaaactgatt
gagcggggcatcgtgaaaacggtaaaatcggccaagaaaattgttgaccggaaagaccct
gttatctgggacattctggaaaacgtactgaaaggtcaccctgttctgctgaaccgggct
ccaacgcttcaccggttgggtattcaggcattccagccgaaactcatcgaaggtaaagct
attcagttgcacccactcgtttgtaccgccttcaacgctgactttgacggtgaccagatg
gccgttcacgtgccactgggccaggaagctgtccttgaagcgtcgctgctgatgctggcg
tcgcacaatattctaaaccctgccaatggtgcgccgattacggtaccatcgcaagacatg
gtattgggtctgtactatgtgactaaaggtcgcaagagcattcctgagtacccaattgtg
ggtgaaggtatgacgttctacggtaccgaagaagtaattattggtatcaatgaaggtaaa
gtttccaagcacgccaacattaagtgccgggtgaaagtccgggacgaaaatggtgacctt
gtctggaaagttatcgatactgtagctggtcgtctgttgttcaaccaggccgttcctgaa
gaagttggttatatcaacgaacttttgacgaagaagaaactgcaacaaatcattgcgttg
atcttcaaaatttcgggtggtgcacggacggctcagttccttgatgaaatcaaagaactt
ggtttccagatggctttcaaaggcggtctgtcaatcggtttgagcgacatcatgattcct
gaagcaaaacagccattggttgaagaagccaaagctgaagttcagggtgtttgggacaac
tacctaatgggtctgattacggagaacgaacgttacaaccaggttatcgatatctggacg
cgcgtaaactcccgtttgaccgagacgctgatgaagcaactcgaagccgatcagggtggt
ttcaactcaatctacatgatgatgcactcgggagcccgtggttctcgcgagcagattcgt
cagttaggtggtatgcggggtctgatggctaagccacagaaaaacctgcagggttcagtt
ggtgagatcatcgaaaacccaattctgtcgaacttcaaagaaggtcttgacgtattggag
tactttatctctacccacggtgctcgtaaaggtctggccgatacagctctgaaaacggct
gatgctggttacctaacccgccgtctgcatgatgtagcccaggatgttattatcagcgaa
gatgattgtggtaccttacgtggtctgcaagtatcagctctgaaagataacgaagatatc
gttgagccactgtctgaacggattttgggtcgtactacggtccacgacatctacgatccg
ctttcgaaagaactgatcatcgcttctggcgaattagttaccgaagaagttgccgctcag
attgacgaaacgagcatcgaaacggttgaaatccgttcggtattgacttgtgagtcacgt
cagggtgtttgtgctaagtgttacggacgtaacctggcatcgggtcgtatggtcgacatc
ggtgaggctgtgggtgttatcgcttctcagtcaatcggtgagccaggtactcagctaacc
ctgcgtaccttccacgtgggtggtacggcgtcgaacatcgctgtcgatgcctcgatcaaa
gcgaaattcgatggtctgatcgaactggaagaaatgcgtacggttgagtcggaagatgcc
gaaggaaacccacaaacggtcgtaatgggtcgttcgggcgaagttcggattgtgaatcct
gacgatcgtaaccaggtgctgatcagcaacaacgttccatacggtgcgttcctgcgggtg
aaagaaggtgatatagtgaagaaaggcgacgacatttgcgcctgggacccttataacgcc
gttatcctgtctgaattgaccggtacgttgaacttcgacgctattgaagatggtatcacg
tatcgtgaagaattcgatgaacagaccggcttccaggagaaggtaatcatcgagactcgc
gataaagcgaaaaacccagccatcgttgttcaaggcacaacaacactttcgttgcacctg
cccgataacgatggaggtccgttgcagaagagctacaacttacctgttggttcgcgtctg
gttgtgaaggaaggtcagaaaattaaagctggtcagccgctggcgaaaattccacgtaac
gttggtaaaacccgcgatatcacgggtggtctgccacgggtaacggaattgttcgaagca
cgtaacccgtcgaacccagctgttgtaagcgaaattgatggcgttgtaacatacggtacg
atcaaacggggtaaccgtgaaatcttcatcgagtcgaaagacggtacgaagaagaagtat
ctggtgcctctgtcgaagttcatccttgtacaggacaatgacttcgttcgtgctggtgct
ccgttgtctgacggtgccattacaccaagtgatattctggccattaaaggtccgaccgct
gttcaggagtatctggtaaatgaaattcaggaagtttaccgtctgcaaggggtgaaaatc
aacgataaacacatcgaggccatcgtgcgtcagatgatgcagaaagttgaaatcatcgac
tcaggcgatactaacttcctcgaaggacaagttgttgataagtgggctttccgcgaagaa
aacgacaagatcctggacgctaaagtggttacggatgctggtgactctgttaacttcaaa
ccaggtatgatcgtaacaagccgtcagcttcgtgacgaaaactcaagcctgaaacgtcgt
gacatggcgcttgctgttgttcgcgatgcgatggccgctgtttcgcaaccaacgctgatg
ggtattactcaatcatcgttaggtacagacagctttatctcggcggcttccttccaggaa
acgacgaaggtattgagtgaagcctctatccgtggcaaacgtgacgtacttgacggtctg
aaagagaacgttatcgtaggtcacttaatcccagccggtacaggtctccgtcgttaccaa
ggcactattgtagggtcgaaagaagaactggaaacagttaccgaatcgcgcgaacaattt
gcccgcagcaagaaacgggcgacggtttaa
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integrated database retrieval system
