Spirosoma foliorum: H3H32_32765
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Entry
H3H32_32765 CDS
T09363
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sfol
Spirosoma foliorum
Pathway
sfol03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfol00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3H32_32765 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfol03019
]
H3H32_32765 (rnr)
03016 Transfer RNA biogenesis [BR:
sfol03016
]
H3H32_32765 (rnr)
Enzymes [BR:
sfol01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
H3H32_32765 (rnr)
Messenger RNA biogenesis [BR:
sfol03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
H3H32_32765 (rnr)
Transfer RNA biogenesis [BR:
sfol03016
]
Prokaryotic type
tRNA degradation factors
H3H32_32765 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
Rrp44_S1
Casc1_C
Motif
Other DBs
NCBI-ProteinID:
QMW02625
UniProt:
A0A7G5GUT3
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All DBs
Position
7767897..7770374
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AA seq
825 aa
AA seq
DB search
MRGKPKQDKYLKAASGRPTSGQSPTTRPREKGFEKSAKVKPIQQADSFLDEMKNDIMAFF
QINDDHSFTQEQVLDHFGTGDRRMKLIMHGLIGELTDEGTLVRQADGSYRADANANLIEG
VVEHVNSRFAFVVPTTTSGVRGDRDEDIWVSTDDLAGAVDGDRVQVIRFTDSRSKGRRIE
GKVARVIERGRTELVGRIEVWPTYGFVVPDSKKIYDDIFIPEEKLGGAADGEKVIVRLTK
YPDPDSRKQRFEGEVITVLGKAGQNNTEMHAILAEFGLPIVFPEEVEQEAEAIPTKIDEK
DIANRRDMRDITTFTIDPVDAKDFDDALSVQVLDNGNFEIGVHIADVTHYVLPGSKLEAE
AYKRATSVYLVDRVVPMLPEKLSNGLCSLRPNEDKLTFSAVFELTPNAHIVKEWFGRTII
HSNRRFAYEEAQDILNANSGDYLEELRLLNELAYKLRDERFKNGAINFETVEVRFRLDEN
GVPLAVYPKIRQDTNKLIEEFMLLANKRVAEFVHSLSKRNKNGEENTMVYRVHEGPAEDK
LRSFSEFARKLGYKLNVDDEHLSSSMNRFMASIEGKPEAGMLQQLAVRTMSKARYSTEDL
GHFGLAFKRYSHFTSPIRRYPDMMAHRLLQHYLDKGKPADREEYEEKCRHSSERERLASE
AERASIKYKQVEFMSRMAPNQVFEGVISGVTEFGIFVEITENSCEGLVRMQDLSDDYYEF
DKDNYRIIGQRHKKMYTFGDPVVVKVKETNLARRSMDFALVSDKAGRATDADSQQLSLAK
SNDSRGSRSGSSKGGQASARRSSNPGKKQGTAPKGENRRGGRGRR
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaaaaccaaaacaagataaatacttgaaggccgcatcgggccgacctacttcg
gggcagtcgccaacgacgcgcccacgtgaaaagggtttcgagaaatcagcaaaagtgaag
cccattcaacaggccgactcttttctggatgaaatgaaaaacgacatcatggcgtttttc
cagattaacgacgaccactcctttacacaggagcaggtattagaccatttcggtacgggc
gaccggcgcatgaaactcatcatgcacggcctcattggcgaacttaccgatgaaggtaca
ctagtacgtcaggcagacggtagttaccgggctgatgccaatgccaacctgattgaaggt
gttgtggaacatgtaaattcgcgctttgcctttgtggttcccacgaccaccagcggtgtt
cggggagatcgggacgaggatatctgggtttcgacggatgacctggccggggccgttgat
ggcgaccgtgtacaggtaattcgatttacggattcacgcagcaaaggacgccggatcgag
ggcaaagttgcccgcgtgatcgaacggggacgcacggagttggtgggtcgtattgaagta
tggccaacttacgggtttgttgttccggatagcaaaaagatttacgacgacatttttatc
ccggaagaaaaactgggtggcgctgccgatggcgaaaaggtaattgttcgactcacgaaa
taccctgatccagatagccgcaagcaacgtttcgagggcgaagtaattaccgtactcggg
aaagcagggcagaacaataccgaaatgcacgctattctggcggagttcggcttaccaatc
gttttccccgaagaggttgaacaggaagcagaagctatcccgaccaaaatcgacgaaaag
gatattgccaaccggcgggacatgcgtgacataactacgttcacgattgacccggttgat
gccaaagatttcgacgatgcgttgtcggtgcaggtgttagacaatggtaacttcgaaatt
ggggttcacattgccgatgtaacacactacgtgttgccgggttctaaactggaagccgaa
gcctacaaacgggctacatcggtttatctggttgatcgggttgttccaatgctccccgaa
aaactgtcgaatggcctttgttcgctgcgtccgaacgaggataaactcacgttctcggct
gtttttgaattaacgcccaatgcacacattgtaaaggaatggttcggccgaactatcatc
cattcgaatcgtcggttcgcttacgaagaagcgcaggatatcctgaacgccaacagtggc
gattatctggaagagcttcggttgctcaatgagctggcctacaaactccgcgatgaacgg
tttaaaaatggtgctatcaacttcgaaacggttgaagtgcggttccggttggacgagaat
ggtgtacccttagctgtttatccgaaaattcggcaggataccaacaagctcatcgaagag
tttatgttgcttgcgaataagcgggtggctgagtttgtgcactcgctgtcgaaacgcaac
aaaaatggcgaagagaatacgatggtataccgtgttcacgaaggtcctgctgaagataag
ctgcgtagtttctccgagtttgctcgtaagctgggctacaagctcaacgtagacgatgag
catttatccagctcgatgaaccgctttatggcgagtattgaagggaagcccgaagccgga
atgctccagcaactggccgtgcggaccatgtcgaaagcgcgctatagtacagaggattta
ggtcacttcggactggcgtttaagcgttattcacatttcacgtcgcctattcgccgttac
cccgacatgatggctcaccgattgcttcagcattacctggacaaagggaaaccggctgat
cgggaagaatacgaagaaaagtgccgacactcgtctgaacgtgaacggttggcctcggag
gccgaacgggctagcatcaaatacaaacaggttgagtttatgagccgaatggcacccaac
caggtatttgagggcgtgatttcgggcgttacagagttcggtatctttgttgaaatcacc
gaaaatagttgcgagggcctcgtcagaatgcaggaccttagcgacgactactacgagttc
gacaaggataattaccggatcattggccagcgccacaagaaaatgtacactttcggcgat
ccggttgtggttaaggtaaaagaaaccaatctggcccgccgaagcatggattttgcttta
gttagcgacaaagctggccgcgctacggatgcggactcacaacagttaagtttagcaaaa
agcaatgatagtcgaggttcccgttcgggaagttccaaaggaggacaagcctctgcccgc
cgatccagcaatcctggcaaaaagcaggggacagcgcccaaaggtgaaaataggcgtggt
ggtcgtggtcggcgttaa
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