Salvelinus fontinalis (brook trout): 129810736
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Entry
129810736 CDS
T11136
Name
(RefSeq) UV excision repair protein RAD23 homolog B-like
KO
K10839
UV excision repair protein RAD23
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03420
Nucleotide excision repair
sfon04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
129810736
09124 Replication and repair
03420 Nucleotide excision repair
129810736
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
sfon03051
]
129810736
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129810736
Proteasome [BR:
sfon03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
129810736
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
129810736
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Ortholog
Paralog
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
UBA_Ucp12
Crinkler
Rad60-SLD_2
UBA_3
CUE
Ubiquitin_4
Dsc3_N
OTU1_UBXL
RAP1
Motif
Other DBs
NCBI-GeneID:
129810736
NCBI-ProteinID:
XP_055717520
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Position
2:complement(5388883..5409943)
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AA seq
373 aa
AA seq
DB search
MQITLKTLQQQTFKIDIDEEETVKTLKERIENEKGNDGFPVAGQKLIYAGKILNDDTAIK
DYKIDEKNFVVVMVAKPKAAPAAAQPSGSAATTSSSTTAPTVPTAASPGSDNPPEASKPA
EERPCSTSAPASTPTSSSGLLTNVNMFEEATSALVTGQSYENMVTEMMLMGYEREQVVAA
LRASFNNPDRAVEYLLTGIPAGEESHAAADPVVPSVGGGTPALNTGSMTTPASVATGANP
LGFLVNQPQFLQMRRIIQQNPSLLPALLQQIGRENPQLLQQISSHQEQFIQMLNEPAQEG
GQGGGGGGGGVGVGGEAGSGMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENL
AANFLLQQNFDDD
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgcagattactttgaaaaccctccagcagcagacatttaaaatcgacatagacgaagag
gagacggtaaaaactttaaaggaaagaattgagaatgagaagggaaacgatggttttccg
gttgcagggcagaaattgatatatgcagggaaaatcctaaatgatgacactgctatcaag
gactataagattgatgagaagaactttgtggttgtcatggtggcaaagcctaaagcagcc
ccggcagctgcccagccttccggttctgccgccaccacgtcctccagcactacagccccc
acagtacccactgctgcctcgccaggctcagataacccaccagaggcgtccaaaccagcc
gaggagaggccctgcagcacttcagccccagcgtcaacccccaccagttcctctggtcta
ttgacaaatgtgaacatgttcgaggaggcaacttctgctctggtgacaggccaatcgtat
gagaacatggtgacagagatgatgctgatgggctacgagagggagcaggtagtggcagcg
ctcagagccagcttcaacaacccagacagagctgtggagtacctgctaacagggatccca
gctggggaggagagccatgcggctgctgacccagtggtgccctctgtgggtggaggaact
ccagctctcaacacaggcagtatgaccacccccgccagcgttgcaacaggagccaatcct
ctggggttcctggttaaccagcctcagtttctccagatgagacggatcatccagcagaac
ccctctctgctccctgccttactacagcagatagggagggagaacccccagcttctgcaa
caaatcagcagccaccaagagcagtttattcagatgctgaatgagccagcccaggagggg
ggacagggtggaggcggaggcggaggtggagtgggggttggtggggaggctggaagtggc
atgaactacatccaggtcacacctcaagagaaggaggccattgagcggctaaaagcccta
ggattcccagaaggacttgttatacaggcctactttgcctgtgagaagaacgagaacttg
gccgctaacttccttttacaacagaactttgatgacgactaa
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