Salvelinus fontinalis (brook trout): 129810950
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Entry
129810950 CDS
T11136
Symbol
lsm4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03018
RNA degradation
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129810950 (lsm4)
09123 Folding, sorting and degradation
03018 RNA degradation
129810950 (lsm4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129810950 (lsm4)
03041 Spliceosome [BR:
sfon03041
]
129810950 (lsm4)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129810950 (lsm4)
mRNA degradation factors
5'-3' decay
Lsm complex
129810950 (lsm4)
Spliceosome [BR:
sfon03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129810950 (lsm4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
129810950
NCBI-ProteinID:
XP_055717946
LinkDB
All DBs
Position
14:complement(44335904..44346866)
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AA seq
147 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQGKGRGGGAGAGRGVFGGRGRG
MPGVGRGQQQQEKKPGGGKPQGVKNQH
NT seq
444 nt
NT seq
+upstream
nt +downstream
nt
atgctaccgctatctttgctgaagactgcacagaaccaccctatgctggtggagttgaag
aatggagagacgtataacggacacttggtcagttgtgacaactggatgaatatcaactta
cgagaagtcatctgcacctcaagggatggagataaattttggaggatgcccgagtgttac
atcagaggaagcaccataaagtacctgcgtatcccagatgaaatcatcgacatggtaaag
gaggaggtggtgtccaagggccgcgggcgaggaggcatgcagcagaacaaacagcagggc
aagggccgagggggaggagcaggagcgggtagaggtgtatttggaggccgtggccggggt
atgccaggagtgggcagaggccagcagcagcaggagaagaagcctggtggtggcaaacct
cagggagtcaagaaccagcactga
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integrated database retrieval system
