Salvelinus fontinalis (brook trout): 129811875
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Entry
129811875 CDS
T11136
Name
(RefSeq) pinin-like isoform X1
KO
K13114
pinin
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129811875
03015 mRNA surveillance pathway
129811875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129811875
03041 Spliceosome [BR:
sfon03041
]
129811875
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129811875
Spliceosome [BR:
sfon03041
]
Complex C
Other components
EJC/TREX
129811875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Aconitase_C
Motif
Other DBs
NCBI-GeneID:
129811875
NCBI-ProteinID:
XP_055719550
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All DBs
Position
15:35325742..35331154
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AA seq
697 aa
AA seq
DB search
MAVAVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQVRRPTIPGIGGGRGRGINL
LRRGLSDISGGPGGPPVKQRDIEGALLRLAGDQRGRRDSRHDSDAEDDDDVKKPVLQSSV
VATSKERTRRDLIQDQTMDERGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEQK
LEVQAEQERKKVEGERRELFEERRAKQTELRLLEQKVELAQLQEEWNVHNTKIVKYIRTK
TKPPIFFLPGRMCSATQKLLDESQKKMNVMFEERCEAFAEHLNKMEARPRRQSQRDTALG
KDLKKEDREEGKPTGQVVKVTGNRFDVEMEEEDEATIEEEKKEEGGEGVKRKEDRKKKPV
EKVGEQESKKGGTKADEMEEAEEDSQDTRIVEFRDVGEQMEGTAVVREAEGQARDGDQKM
EDSPVEVGNEKGVEEQQLVKAEKEPLHGQDLTAVSDDQEKSIEMQPTEDDEPCTEVATPL
LSECNPSVEVSDVTSMAPEVQIPLLEPGMDPEPLTTEQRQEADQGAIKQTTNAQPAQAQD
DAVAPKELVPPSKEASRGRKKSKDKKGGGGGRSSSSSSSSSSGSSSSGSSGSSSSGSSSR
SSSSSGSSSSSSSRSRSRGRKDKKRRRRPSERDRERKKAVVERSHKSSKGSGRESKGSKD
KSSKSDRKRTTSEGSRSGKRSSRGDRDRKSDRKEKRR
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcagtgggatctttgcaagcccagcttgagaaagcgaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggtcgggatcctaatgaattgagacctggc
caagttagacggccaaccatcccaggtattggaggaggtaggggtcgaggaatcaacttg
ttgagacgtggactctccgacatcagcggtggaccaggaggacccccagtgaaacagagg
gatattgaaggggcactcctgaggctggccggtgaccagagagggaggagagattcacgc
catgacagcgacgctgaagatgatgacgatgtcaaaaagccagtgttgcagtcatcagta
gtagctacctccaaggagcgtacacgtcgagacctgatccaggatcagaccatggatgag
aggggaaaacaaaggaatcgacgtatgtttggcctgttgatgggaacattacagaaattc
aagcaggaatctaatgtggcaacggataggcaaaagaaacgcattgagattgaacaaaaa
ttggaagttcaagctgaacaagagcgcaaaaaagtagagggcgaaagacgagagctcttt
gaggagaggcgtgccaagcagacagagctgagactgttggaacaaaaagtggagcttgct
cagttgcaagaggagtggaatgtgcacaacacaaaaattgtcaagtacatccgcacaaag
accaagccacccatcttctttctgcctgggaggatgtgctcagccactcagaagctctta
gatgagtctcagaaaaaaatgaatgttatgtttgaggagagatgcgaggcatttgctgag
catctgaataagatggaggctcggcctcggcgccagtctcagagggacaccgctctgggt
aaggacctgaagaaagaagatcgagaggagggtaagcccacgggtcaggtagtcaaagtg
acaggtaaccggtttgatgtggagatggaggaggaagatgaggcaacaatagaggaggaa
aagaaggaagaggggggtgagggtgtaaagcgtaaggaggacagaaagaaaaagccagta
gagaaagttggggagcaggagtctaagaagggggggactaaagcagatgagatggaggag
gctgaggaagacagtcaagacactagaatagtggagttcagagatgtgggggagcagatg
gagggtactgcagtagtaagagaggctgaagggcaggccagggatggggatcagaagatg
gaggatagtccagtggaggtaggtaatgagaaaggagtagaagagcagcaactggttaag
gcagaaaaggagccccttcacggtcaggacctcacagctgtgtcagacgaccaggagaag
agcattgaaatgcaaccaaccgaagatgacgagccatgtacagaagtggccacacccctg
ctctcagagtgcaaccctagtgtggaagtctctgatgtaacatctatggctcctgaggtt
cagatccccctactggagcctggaatggatccagagccgctcacaaccgagcagcgccaa
gaggctgatcaaggtgccataaagcagaccactaatgcccagcctgcccaggcccaggat
gatgctgtggctcccaaggagctggtgcccccgagcaaggaagccagcaggggacgtaag
aagtcaaaggacaagaagggaggtggtggtggcagaagcagcagtagctcatctagcagc
tcctccggctcctcgtccagtgggagctccggctcctcctctagtggctcctccagcagg
agcagctcctccagtggcagctcctccagctcttctagcaggagccgcagccgagggagg
aaggacaagaaacgtaggaggcggccatccgagagggacagggagcggaagaaggcagta
gttgagaggagccacaagtcgtccaagggcagtggtcgcgaatccaaaggttccaaagat
aagagctccaagtctgacaggaagaggaccacctctgaaggcagccggtcagggaagagg
tcctctcgcggtgacagggatcgcaagtcagataggaaggaaaagaggcgttaa
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