KEGG   Salvelinus fontinalis (brook trout): 129811985
Entry
129811985         CDS       T11136                                 
Symbol
tdp1
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    129811985 (tdp1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sfon03400]
    129811985 (tdp1)
DNA repair and recombination proteins [BR:sfon03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     129811985 (tdp1)
SSDB
Motif
Pfam: Tyr-DNA_phospho
Other DBs
NCBI-GeneID: 129811985
NCBI-ProteinID: XP_055719794
LinkDB
Position
15:complement(39968604..40043260)
AA seq 648 aa
MGSEMSQASQHGKWTLSSSDDDNDDPLPSASNNNNRPLLFGSPPPDQHTSSVSNHNSPKI
ASNFHQPKHGPDPPPSIEVKPEPKSDTVTAASPLSIGSEARQASQASQLKPVKYESNQSR
PFLAGKRKKDDDSISGWALSDSDDDDDDDKDKGQSSGQKDPPPKRSSPKLKKAKVSERPP
SPHGRTYYKDEPDDFFETSVPPVNDTYRFYLNKVTGLEKRYNTGALHIKEILSPLFGTLK
ESVQFNYCFDIAWMLQQYPPEFRDKPVLIVHGDKREAKARLLQQAQPYSQVRFCQAKLDI
AFGTHHTKMMLLWYEEGFRVVILTSNMIRADWYQKTQGLWMSPLYLRLPKGSPETAGESP
TLFKRDLLEYLGAYRAPEITDWIQRIREHDLSETRVYLIGSTPGRYLGSDMERWGHLRLR
KLLRDHTRPIPDEEKWPVIGQFSSIGSMGLDKTKWLAGEFLRTLTTLGKSSLRPDPPMHL
IYPSVDDVRTSLEGYPAGGSLPYSIQTAQKQLWLHSYFHRWQAETTGRSHAMPHIKTYLR
ASPDFTQLAWFLITSANLSKAAWGALEKNNTQVMVRSYELGVLYVPSAFSMSTFPVQMDV
FPATTSSTSFPVPFDLPPKRYSSKDQPWMWNIPYTQAPDTHGNIWVPS
NT seq 1947 nt   +upstreamnt  +downstreamnt
atgggatcagaaatgtcacaggcgagtcagcacgggaaatggacactctccagcagcgat
gacgacaacgatgacccactcccttctgcctcaaacaacaacaacagacctctgttgttt
ggcagccccccgcctgaccaacacacatcttcagtctctaaccacaactcccccaagata
gcctccaacttccaccaacccaaacatggtcctgatcctccaccttccatagaggtgaaa
cctgaacctaaatctgacacagtgactgctgcctcccccctctctattggctctgaggcc
agacaggcatcccaggccagccaattgaagccagtaaagtatgaatccaaccaatccaga
ccctttctggctggtaagaggaagaaggatgatgattcaatttccggctgggctctctcg
gacagtgatgatgatgacgacgatgataaggataaaggtcaaagttcaggacagaaagac
ccgccacccaagaggtcgagccccaagctgaagaaggcaaaggtgtcggaaaggcctccc
agcccccatggcagaacctactacaaagacgaaccagatgacttctttgagactagcgtg
cctcctgtcaatgacacctacaggttctacctcaacaaggtcacagggctggagaagagg
tacaacactggggctctgcacatcaaagaaatcctctcccctttgttcgggacactgaag
gaatctgtgcagttcaactactgctttgacattgcctggatgttgcagcagtacccgcct
gagttcagagacaagcctgttctgattgtccacggagacaagagagaggccaaggcccgt
ctgctccagcaagcccagccgtacagtcaagtccgcttctgccaggccaaactggatatt
gctttcggaacacaccacacgaagatgatgttgctgtggtacgaggaaggcttcagagtg
gtcatccttacctccaacatgatcagagcagactggtaccagaaaacacaggggttgtgg
atgagtcctctgtatttacggttacccaaggggagtccagagacagcgggggagtctccc
acccttttcaagcgggacctcctggagtacctgggggcctatcgtgcccccgaaatcacc
gactggatccagaggatcagagagcatgacctgtctgagaccagggtgtatctgataggt
tccactccagggaggtacttgggctcagacatggagaggtggggtcacctgaggttgaga
aaactgttgcgcgaccacacgcggcccatccccgacgaagagaagtggcctgtcattggt
cagttctccagcatcggctccatggggttggacaagaccaagtggctggcaggggagttc
ctgcgcactctgaccaccctgggcaaatcgtctcttcgcccagatcccccaatgcacttg
atctacccgtcagtggacgatgtgaggaccagtctggagggctatccagccggtggttct
ttaccctacagcatccagactgctcagaaacaactctggctccacagctacttccatcgc
tggcaagctgagacgacggggaggagtcacgccatgccgcacatcaagacctacctgagg
gcttcgccagacttcacacaactagcctggttccttatcacaagtgctaacttgtccaaa
gcagcgtggggggctctggagaagaacaacacacaggtgatggtccggtcatacgaactg
ggagtcctctatgtgccctctgccttcagtatgagtacctttcccgtccagatggatgtg
tttcctgccaccacttcctctacctcatttcctgtgcccttcgacctgccacccaaacgc
tactcgagtaaagatcagccatggatgtggaacattccctacacccaggctccagacaca
cacggtaacatctgggtcccctcctga

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