Salvelinus fontinalis (brook trout): 129812771
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Entry
129812771 CDS
T11136
Name
(RefSeq) polyadenylate-binding protein 4-like
KO
K13126
polyadenylate-binding protein
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03015
mRNA surveillance pathway
sfon03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129812771
09123 Folding, sorting and degradation
03018 RNA degradation
129812771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129812771
03041 Spliceosome [BR:
sfon03041
]
129812771
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
129812771
mRNA cycle factors
Stress granule specific factors
129812771
Spliceosome [BR:
sfon03041
]
Complex C
Other components
Complex C specific factors
129812771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_5
RRM_7
RRM_10
RBD_RDR6
RRM_3
POP1_C
ApbA_C
Motif
Other DBs
NCBI-GeneID:
129812771
NCBI-ProteinID:
XP_055720598
LinkDB
All DBs
Position
16:18796862..18805619
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AA seq
639 aa
AA seq
DB search
MNTETTGSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
SQPTDAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGDDMNDDKLKEMFDQYGRILSVKVMTDPSGKSRGFGFVSYE
KHEDANKACEEMNGQEFNGKTVFVGRAQKKIERQGELKRKFEMLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFTPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRITGMRAMPANAIINQFQPASGYFMPAVPQGQNRT
TYYAPNQLTQMRPNPRWQQQGGRGQGGFQGMPNSLRQPGPRANLRHLAPNASAQGPRGMG
PAGAQRVGGAGQAMGPRPSMGVPAPRAMPPYKYATSIRNTNPQVVQPIALQQAQPAVHVQ
GQEPLTSSMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESH
ESLRSKVEEAVAVLQAHQAKKDATQKVGVIPTTTAASTS
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgaacacagagactacagggagttatccaatggcttctctctatgttggcgatctgcac
cctgatatcacggaggctatgctgtatgagaaattcagcccagcaggaccggtgttgtct
attcgagtatgtcgtgatatgatcacccgacgctctctgggttatgcctatgtgaatttc
tcgcaacccaccgacgctgagagagccctggacaccatgaactttgatgtggtgaaaggg
aagccaatcagaatcatgtggtcacagagagacccctcactcaggaagtctggggtgggc
aacgtgttcatcaagaacctggacaagaccatcgacaacaaggcactctatgacaccttc
tctgcctttgggaacatcctgtcttgcaaagttgtgtgtgatgagaatggatccaaagga
tatgcgtttgtgcactttgagacgcaggacgcagctgaccgcgccattgaaaagatgaac
ggcatgcttctgaacgaccgcaaggtgttcgttggacgtttcaagtctcggaaggagagg
gaggcagaactcggggccaaggcaaaggagttcaccaacgtctacatcaagaactttgga
gacgacatgaacgatgacaagctaaaggaaatgtttgaccaatacggtagaattctcagt
gtgaaggttatgaccgaccctagtggcaaatctcgaggctttggctttgtgagttacgag
aaacacgaggatgctaacaaggcatgtgaggagatgaatggccaagagttcaatgggaag
actgtgtttgtgggacgcgctcagaagaagattgaacggcagggggagctgaagaggaag
tttgagatgctgaaacaggagaggatcagccgttaccagggcgttaatctttacattaag
aacttggatgacaccatagacgatgagaaactgcgcaaggaattcaccccattcgggtcc
atcaccagtgccaaagtgatgctggaggaggggcggtccaagggctttgggtttgtctgc
ttctcctctcctgaggaggccaccaaggctgtgactgagatgaacgggcgcattgtgggc
tccaagcccctctacgtggccttggctcagcgcaaagaagagcgcaaggcccacctcact
aaccagtacatgcagcgcatcactggcatgagggccatgcctgccaacgccatcatcaac
cagttccagcccgccagcggatacttcatgcctgcagtgcctcagggccaaaacaggacc
acctactatgcacccaatcagctgacccagatgaggcccaacccccgttggcagcagcag
ggtggcagaggccaaggtgggttccaggggatgcccaactccctgcgccagcctggtcca
cgtgccaacctgagacacctggctcccaacgccagcgcccagggcccacgaggcatgggg
cctgctggagctcagagagttggaggtgctggccaggccatgggtcctcgtccctccatg
ggagtccctgcccctcgtgccatgccaccctacaagtacgccaccagcatacgcaacact
aacccccaagtggtgcagcccatcgccttacagcaggctcagccagctgtacatgtgcag
ggtcaggagcctctcacatcctccatgctggcttctgcaccccctcaggagcagaagcag
atgctgggggagcgcctgttccccctgatccaggccatgcaccccagcttggcagggaag
atcactgggatgctgcttgagattgataactctgagctgctgcacatgctggagtcccat
gaatccctgcgctccaaggtggaggaggctgttgccgttctgcaggcccaccaggcaaag
aaggatgccacacagaaagtgggagtcatccccacaaccactgctgcctctacttcctga
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