Salvelinus fontinalis (brook trout): 129813080
Help
Entry
129813080 CDS
T11136
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03013
Nucleocytoplasmic transport
sfon03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129813080 (pnn)
03015 mRNA surveillance pathway
129813080 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfon03019
]
129813080 (pnn)
03041 Spliceosome [BR:
sfon03041
]
129813080 (pnn)
Messenger RNA biogenesis [BR:
sfon03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129813080 (pnn)
Spliceosome [BR:
sfon03041
]
Complex C
Other components
EJC/TREX
129813080 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
129813080
NCBI-ProteinID:
XP_055721224
LinkDB
All DBs
Position
16:35378802..35385462
Genome browser
AA seq
679 aa
AA seq
DB search
MAVVVGSLQAQLEKAKESLKNVDDNIRKLTGRDPNELRPGQARRPTIPGVGGRGRGINLL
RRGLSDIGGGPGGPPAKQRDIEGALLRLAGDQRARRDSRHDSDAEDDDDVKKPALQSSVV
ATSKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESNVATDRQKKRIEIEHKL
EVQAEQERKKVEGERRELFDERRAKQTELKLLEQKVELAHLQEEWNVHNTKIVKYIRTKT
KPPIFYLPGRMCSATQKLFDESQKKMNVMFEERREAFAEYLNKMEARPQRQSLRDNALGK
DLKKEEQEEGKPMGQVVKVTGNRFNVEMEDEASLEKEEGDVGVNRKEDRKKKTEKVREQA
PKKGENEENGQDIRIVEFREVEEQMEVTAVVREAEWQVGDQDNKMEDSLVIGGAEVGNEK
EADQQQVKVEKENKPLQNQDPTAVSGDQEKSFEMQPTEDEEPHTEVSIPLLLEPNPSLEV
SDGASIAPEVQIPLLEAGTEPLTTEQSQEADQGAMKQTVDVQPAQYDAAPKELEPLIEES
SRGRGKPKSKDKKGGGGSSSSSSSSSGSSSSGSSGSSSGSSSRSSSSSGSSSSSSSSRSR
SRGRKDRKHRRKLSEGERKKGGGDKSQKSSMGSGRESKGSKDKGSKSDRKRTSSEGCRSG
KMSSRSDRDRKSARKEKRR
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtagtaggttctttgcaagcccagcttgagaaagctaaagagagtttgaaa
aatgtagacgataatattcgtaaattaactggccgggatcctaatgaattgagacctggc
caagctagaaggccaaccatcccaggtgttggaggtaggggacgtggaatcaacttgttg
agacgtggactctccgacattggtggaggacctggaggacccccagctaaacagagggac
attgaaggggcccttctgaggctggccggtgaccagcgagcgaggagagattcgcgccat
gacagtgacgctgaggatgatgacgatgtcaaaaagccagcgttgcagtcatcagtagta
gctacctccaaggagcgtacgcgtcgagacctgattcaggatcagaccatggatgagaaa
ggaaaacaaaggaatcgacgcatgtttggcctgttgatgggaacgttacagaaatttaag
caggaatctaatgtggcaacagataggcaaaagaaacgcattgagattgaacataaattg
gaagttcaagctgaacaagaacgcaagaaagtagagggcgaaagacgagagctctttgat
gagaggcgtgccaagcagacagagctaaaactgttggaacagaaagtggagcttgctcac
ttgcaagaggagtggaatgtgcacaatacaaaaattgtcaagtacatccgcacaaagacc
aagccacccatattctatctgcctgggaggatgtgctcagccactcagaagctctttgat
gagtcgcagaaaaaaatgaatgttatgtttgaggagagacgcgaggcgtttgccgagtat
ctgaataagatggaggctcggcctcaacgccagtctctgagggacaacgctctgggtaag
gacctgaagaaagaagaacaagaggagggtaagcccatgggtcaggtagtcaaagtgaca
ggtaatcggtttaatgtggagatggaggacgaggcatcactagagaaggaagagggggat
gtgggtgtaaatcgtaaggaggacagaaagaaaaagacagagaaagtcagggagcaggca
cctaagaagggggagaatgaggaaaatggtcaagacattagaatagtggagttcagagag
gtggaagagcagatggaggttactgcagtggtgagggaggctgagtggcaggtcggggat
caggataataagatggaggatagtttggtgataggtggggcagaggtaggtaatgagaag
gaagcagatcagcaacaggttaaggtagaaaaggaaaataagccccttcagaatcaggac
cccacagctgtgtcaggcgaccaggagaaaagctttgaaatgcaaccaaccgaagatgaa
gagccacatacagaagtgtccatacccttgctcttagagcccaaccctagtctggaagtc
tctgatggagcatctatagcccctgaggttcagatccccctgctggaggctggaacagag
cctctcacaacagagcagagccaagaggctgatcaaggcgcaatgaagcagaccgttgat
gtccagcctgcccagtatgatgctgcccccaaggagctggagcctctgatcgaggaatca
agcaggggacgtggaaagcccaagtcaaaggacaagaagggaggtggtggcagcagtagc
tcctctagcagctcctctggctcctcgtccagtgggagctccggctcctctagtggctcc
tccagcaggagcagctcctccagcggcagctcctcttccagctcctctagcaggagccgc
agccgggggaggaaggacaggaagcataggaggaagctgtccgagggggagaggaagaag
ggaggtggtgacaagagccagaagtcgtccatgggcagtggtcgtgaatccaaaggttcc
aaagacaagggctctaagtctgacaggaagaggaccagctctgagggctgccggtcaggg
aagatgtcctctcgcagtgaccgggatcgcaagtctgctaggaaggaaaaaagacgttaa
DBGET
integrated database retrieval system
